Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq6 223 4e-53 seq7 145 9e-30 seq2 138 1e-27 seq1 129 7e-25 seq8 107 2e-18 seq11 100 3e-16 >seq6 Length=31977256 Score = 223 bits (246), Expect = 4e-53 Identities = 494/737 (67%), Gaps = 17/737 (2%) Strand=Plus/Plus Query 161976 TGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTT 162035 |||| |||||| | ||||||||||| || | |||| | | |||| | | ||| | | Sbjct 21888305 TGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACATCAATCT 21888364 Query 162036 GAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCT---ATTGCGTTCTCTGGTCCT 162092 ||||| || | || || | | || || ||| | ||||| ||||| ||||| Sbjct 21888365 GAACTTGCTCAATTTTTTCAATTACAACCTTATAATAATGTAATTGCATTCTCAGGTCCA 21888424 Query 162093 ATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTC 162152 |||| | ||||||| || |||||||| || ||| ||||||||| |||| || || Sbjct 21888425 ATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGATTCTTT 21888484 Query 162153 GCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCAT 162212 ||||| ||| | ||||| | ||| | || | | ||| | ||| |||| ||| Sbjct 21888485 GCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATATTTTTCCAAAGATTTCAT 21888544 Query 162213 AACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTT 162272 | ||||| | ||||| || |||||| ||||||||| | || | |||| ||||| Sbjct 21888545 ACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTATTGGGTGTTGCACTA 21888604 Query 162273 CTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCA 162332 |||| |||||||| || | || || |||| ||| |||| || ||||| || | | Sbjct 21888605 CTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGTGATGGTGAA 21888664 Query 162333 AACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGA-CTTATTCTATGGTCACTGC 162391 || || ||| || ||| | | || || ||| | | | ||||| ||| | |||| Sbjct 21888665 AATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAAAAACCTATTCAATGATTACTGT 21888724 Query 162392 AAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTT-TCTAACAAGCGGTGGCTTCATT 162450 || ||||| ||||| || ||||| || ||| ||| ||||| |||| ||| | |||| Sbjct 21888725 TAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATTGGTTACATT 21888784 Query 162451 TTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGG-T 162509 | || ||||||||||| || || | || |||| | | |||| || |||| | Sbjct 21888785 TATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGATAGTTGGTT 21888844 Query 162510 CTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGAT 162569 | | || | ||||| |||||||| |||||||| ||| || ||| | ||| ||| Sbjct 21888845 CGTCCT-TGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAATCTGTGCAATAGA---- 21888899 Query 162570 CCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGG 162629 ||| | || || |||||||| || ||| | | || ||||| | ||||||||| Sbjct 21888900 ------TTTAAGACTTTATACACTAAAAATATTTTCTTAAACGAAGGTATTCGTGCATGG 21888953 Query 162630 TTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGA 162689 | || || | || | ||||| |||||||| |||| ||||| ||||| | | Sbjct 21888954 ATGACAACTCAAAATCAGTCTCATGAAAACTTTATATTCCTTGAAGAGGTTCTATCACGT 21889013 Query 162690 GGCAACGCCCTTTAATA 162706 | ||| | |||||||| Sbjct 21889014 GAAAACACTCTTTAATA 21889030 Score = 86.0 bits (94), Expect = 7e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 |||||| | ||||| ||||| || | ||| |||| || || || || | |||||| Sbjct 31674092 TACATTCTTGATGCTGCAGAGGAAGAAGGCATTGACCTTCCTTACTCATGCAGGGCTGGT 31674151 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 |||||||||| ||||| || ||| || | || ||| ||||||||||| | Sbjct 31674152 TCTTGCTCTTCATGTGCTGGCAAAGTTGTGGGTGGCCAAGTGGACCAGTCTGATGGTAAC 31674211 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||| | ||||| ||||| |||||| || || || | || |||||||| ||||| ||| Sbjct 31674212 TTCCTTGATGACGACCAAATTGAACAAGGCTTTGTTCTCACCTGTGTTGCTTATCCCACT 31674271 >seq7 Length=51758522 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346 || ||||| ||||| || |||||| | ||| | |||||||| || ||||| ||| Sbjct 47750129 TACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTT 47750188 Query 160347 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAA 160406 |||||||| ||||| || || || || ||||||| ||| | | |||||| | |||||| Sbjct 47750189 GCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAA 47750248 Query 160407 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTA 160466 || || || |||| ||||||| | || || ||||||||||| || | ||| ||||| Sbjct 47750249 GGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTA 47750308 Query 160467 TTCCAAGCAGAACACAATATCCTTATGCATCCGTT 160501 || || || || || ||||| ||||||||||| || Sbjct 47750309 TTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq2 Length=49040938 Score = 138 bits (152), Expect = 1e-27 Identities = 237/341 (70%), Gaps = 15/341 (4%) Strand=Plus/Plus Query 162367 AAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGT 162426 |||| |||||||| ||||| ||| || ||||| ||||| || ||||| || |||| | Sbjct 27893024 AAGAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTT 27893081 Query 162427 TTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA 162486 |||| || | ||||| || ||||| ||||| || || || ||| |||||| Sbjct 27893082 TTTCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGA 27893131 Query 162487 CATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTT-CGTGCTTACGATTTCGTGAGT 162545 || || | || | ||| || || ||||| |||||||| |||||||| | Sbjct 27893132 TGAGTGCTCTTAGGATAGTCGGTTAGGC-CTTGACCTTACGTGCTTATGATTTCGTTTCT 27893190 Query 162546 CAGGAGATCA-GAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCT 162604 || || || | ||||| ||||||||||| ||||| | || ||||| || || ||||| Sbjct 27893191 CAAGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCT 27893250 Query 162605 GCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTAT 162664 | || ||||| | |||| ||| | ||| || || || | ||||| ||| |||| Sbjct 27893251 CTTAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTAT 27893310 Query 162665 CTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 ||||| || || ||||| || | || ||||| ||||||| Sbjct 27893311 ATTCCCTGAGGAGGTTCTACCACGTGGTAACGCTCTTTAAT 27893351 >seq1 Length=52205531 Score = 129 bits (142), Expect = 7e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 162396 CGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTC 162455 ||||| ||||| || ||||| || |||| ||||| || || || ||| | ||||| || Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 162456 ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCT 162515 ||||| ||||| || || | ||| |||||| || |||| | | ||| | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 162516 CTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAG 162575 || ||| | |||||||| |||||||| ||| || ||| | ||||| ||||||||||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 162576 TTTGAAACGTTCTACACTAAGAACATTCT 162604 ||||| || |||||||| || || ||||| Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCT 38350289 >seq8 Length=59662532 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 160807 GTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAG 160866 |||| || |||||||| ||| | | ||| |||||||||||||| | || |||||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 160867 ACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACT 160926 | | | || || ||| |||||||||||||| |||||||| ||||| || || || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 160927 TCCCACTCGACCTCGCTGC 160945 |||| || || || ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 >seq11 Length=50367376 Score = 100 bits (110), Expect = 3e-16 Identities = 160/224 (71%), Gaps = 12/224 (5%) Strand=Plus/Plus Query 161133 TAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCT 161192 ||||||||||||| || || |||||||| || || || || || || || ||||||| Sbjct 9650257 TAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCCTGCCGCGCGGGAGCTTGCT 9650316 Query 161193 CTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGG 161252 || ||||||| || || ||| || | || |||| || |||||||| || ||| | | Sbjct 9650317 CTACCTGTGCTGGGAAGATTGTTGCTGGCTCAGTGGATCAGTCTGATGGCTCATTCCTTG 9650376 Query 161253 ATGATGACCAGATTGAATCTGGATTCCTTT----TGACATGTGTTGCATATCCTACTAGC 161308 |||| |||| | |||| ||| |||| | || ||| | | ||||| ||| Sbjct 9650377 ATGACAACCA-ACTGAA---GGAAGGCTTTGTACTTACCTGTATCTCCTATCCAACTGCA 9650432 Query 161309 GATTGTGTGATTCAAACTGAGCAAG--AGGAGAATCTGTACTGA 161350 |||||||| ||| ||||| | |||| ||||||| || |||||| Sbjct 9650433 GATTGTGTAATTGAAACTCA-CAAGGAAGGAGAA-CTCTACTGA 9650474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559499048389600