Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq6 179 5e-40 seq9 172 8e-38 seq2 132 7e-26 seq1 125 1e-23 seq11 91.5 2e-13 seq4 87.8 3e-12 >seq6 Length=31977256 Score = 179 bits (198), Expect = 5e-40 Identities = 416/616 (68%), Gaps = 22/616 (4%) Strand=Plus/Plus Query 176238 ATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGT 176297 ||||||||| ||||| || | | | ||||| ||| || ||| | || ||||| ||| Sbjct 21888407 ATTGCATTCTCAGGTCCAATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGT 21888466 Query 176298 CAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGC-AATCTTTAGAT--TCCTA 176354 || | | || |||||||| || ||| || ||||| ||| || | || || || Sbjct 21888467 CAGTTTGGTTGATTCTTTGCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATA 21888526 Query 176355 TTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCT 176414 || |||| || | || || | |||||| | ||||| || |||||| ||||||||| Sbjct 21888527 TT-TTTC--CAAAGATTTCATACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTC 21888583 Query 176415 GGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTA 176474 | || | |||| |||||||||| || || ||||| | || || |||| ||| || Sbjct 21888584 ATTGTATTGGGTGTTGCACTACTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTA 21888643 Query 176475 TATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAG 176534 | ||||||||| || | || || || ||| || | | || || ||| | Sbjct 21888644 TTTGAAGATGGTGATGGTGAAAATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAAA 21888703 Query 176535 A-CCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAG 176593 | ||||||| ||| |||||| || ||||| ||||| |||||||| ||||||| ||| Sbjct 21888704 AACCTATTCAATGATTACTGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCT 21888763 Query 176594 -TAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCT 176652 |||||||| |||| | || || |||||||||||||| || || | || | || | Sbjct 21888764 CTAATAAGCATTGGTTACATTTATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGA 21888823 Query 176653 CAAGTATTGGCATCATTGG-GCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAA 176711 | |||| || |||| | | || | || || |||||||||||||| || ||| Sbjct 21888824 GTGTTCTTGGGATAGTTGGTTCGTCCT-TGAACCTACGTGCTTATGATTTCGTTTCTCAA 21888882 Query 176712 GAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTT 176771 || || | ||| ||| ||| | ||||| ||||| || || || ||||| Sbjct 21888883 GAAATCTGTGCAATAGA----------TTTAAGACTTTATACACTAAAAATAT-TTTCTT 21888931 Query 176772 -AACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATT 176830 |||||||| | | ||||||||| || || |||| | ||||| ||| |||| Sbjct 21888932 AAACGAAGGTATTCGTGCATGGATGACAACTCAAAATCAGTCTCATGAAAACTTTATATT 21888991 Query 176831 CCCAGAAGAAGTTCTA 176846 || ||||| |||||| Sbjct 21888992 CCTTGAAGAGGTTCTA 21889007 >seq9 Length=37469608 Score = 172 bits (190), Expect = 8e-38 Identities = 371/549 (68%), Gaps = 8/549 (1%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 |||| ||||||| | | | ||| |||||| | |||||||||| ||||| || ||||| Sbjct 1917741 AATCTTCTTTACATATGATTGTTTGGTGTTTTGATGATTCCTATTGTGTTAACCACAACT 1917800 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || ||||||||||| | | ||| || |||||||| | || || || | || Sbjct 1917801 TT-TGTATTTATTATCGCTTTTATCGTTGCCCCTCCAGTGGATAATGATGGTATTCACGA 1917859 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 || || ||| || || | ||||||||||| ||||| |||||||| | ||| || Sbjct 1917860 GCCTGTTTTTGGATCCCTACTTTATGGAAACAATATCATTTCTGGTGCGACTATTCATAC 1917919 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 || || || | | | || || || || || ||||||| | | || ||||| Sbjct 1917920 TTTTGCGGCTATAGATTTGCATTTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATG 1917979 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCA---CTTCCTTATTGGTATCTA 174790 || ||||||| ||||||| ||||| |||| | || ||| |||| | ||| || Sbjct 1917980 CCTATACAACGACGGTCCTTATGAACTAATTGTTCTACATTTCTTACTTAGT-GTAGCT- 1918037 Query 174791 CGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTG 174850 ||| ||||| ||||| |||||||| | |||||| |||||| | |||||| Sbjct 1918038 -TGCTACATGGGTCGTGAATGGGAACTTAACTTTCGTTTGGGTATGCATCATTGGATTGC 1918096 Query 174851 TGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGG 174910 ||| ||||| || | || | |||||| | | | || ||| | |||||||| | || Sbjct 1918097 TGTTGCATATTCAACTCCTGATGCAGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGG 1918156 Query 174911 TCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTT 174970 |||||| || || || | ||||| || || || | ||| || ||||| | ||| | Sbjct 1918157 TCAAGGAAGCTTTTCGGATGGAATGCCTTTAGGAATTTATGGTACTTTCAATTTTATGAT 1918216 Query 174971 GGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGG 175030 || || || || ||||| || | ||||| | || ||| |||| | || | || Sbjct 1918217 TGTATTTCAGATTGAGCATAATATTCTTATGCATCAATTTCACGTGTTAAGTGTGACTGG 1918276 Query 175031 TGTCTTCGG 175039 ||| || || Sbjct 1918277 TGTATTTGG 1918285 Score = 132 bits (146), Expect = 7e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 174492 AACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCA 174551 || |||||||||||| | | ||||| |||||| | ||||||| ||| || || | ||| Sbjct 33213501 AAAAATCGTCTTTACATAAGATGGTTTGGTGTTTTGATGATTCTTACTTTATTGACTGCA 33213560 Query 174552 ACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCG 174610 ||| | ||| || ||||||||||| | | |||||| ||| | || || || || || || Sbjct 33213561 ACT-TCTGTATTTATTATCGCTTTTATTGTTGCTCCTCCATTAGATATTGATGGTATTCG 33213619 Query 174611 TGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCC 174670 |||||| | ||| || | | |||||||| || ||||| ||||||||| || |||| Sbjct 33213620 TGAACCTGATTTTGGATCCTTACTTTATGGAAATAATATCATTTCTGGTGCAATTATTCC 33213679 Query 174671 TAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGC 174715 || ||| | || || ||| | || || || || || |||||||| Sbjct 33213680 TACTTCCACGGCTATAGGTTTGCATTTTTATCCTATATGGGAAGC 33213724 >seq2 Length=49040938 Score = 132 bits (146), Expect = 7e-26 Identities = 231/333 (69%), Gaps = 15/333 (5%) Strand=Plus/Plus Query 176530 AAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGT 176589 |||| || ||||| ||||| ||| || ||||| ||||| |||||||| |||||||| | Sbjct 27893024 AAGAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTT 27893081 Query 176590 TTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGG 176649 || ||| | || ||||||||||| ||||| || || || ||| | ||| Sbjct 27893082 TTTCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGA 27893131 Query 176650 TCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTT-CGTGCTTATGATTTTGTGAGC 176708 | | || | || | | || | | ||| | ||| |||||||||||||| || Sbjct 27893132 TGAGTGCTCTTAGGAT-AGTCGGTTAGGCCTTGACCTTACGTGCTTATGATTTCGTTTCT 27893190 Query 176709 CAAGAGATTA-GAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCT 176767 ||||| ||| | ||||| ||||||||||| ||||| | ||| ||||| || || || || Sbjct 27893191 CAAGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCT 27893250 Query 176768 TCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGT 176827 | |||||||| | | | ||||| ||| || ||||| | ||||| || | Sbjct 27893251 CTTAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTAT 27893310 Query 176828 ATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 |||||| || || |||||||| | |||||||| Sbjct 27893311 ATTCCCTGAGGAGGTTCTACCACGTGGTAACGC 27893343 >seq1 Length=52205531 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 176559 CGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTT 176618 ||||| ||||| |||||||| |||||||| ||| ||||| |||||| | || |||||| Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 176619 ATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCT 176678 ||||| ||||| || || | ||| | ||| | | |||| | | || | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 176679 CTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAG 176738 || || | |||||||||||||| || ||||| || | ||||| ||||||||||| Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 176739 TTTGAAACTTTCTACACAAAGAACATCCT 176767 ||||| ||||||||||| || || || || Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCT 38350289 >seq11 Length=50367376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 176538 TATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAAT 176597 ||||| ||||||||| | || ||||| ||||| |||||||| |||||||| ||| ||| Sbjct 3718489 TATTCAATGGTTACTCCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 3718548 Query 176598 AAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 || | |||| | || ||||||||||| ||||| || Sbjct 3718549 AAACATTGGTTACATTTCTTTATGTTATTTGTACC 3718583 >seq4 Length=45960019 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/187 (72%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 176676 GCTCTTAATCTT-CGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCC 176734 |||| | | ||| |||||||||||||| || ||||| || | ||| | ||||| | Sbjct 43482219 GCTCCTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGTGCATGA-AAGATTC 43482277 Query 176735 TGAGTTTGAAACTTTCTACAC-AAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGA 176793 ||| ||||| ||||| ||||| ||| || || || | |||||||| | | || |||| Sbjct 43482278 TGAATTTGATACTTTGTACACAAAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGA 43482337 Query 176794 TGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAG 176853 ||||| | ||||| || ||||| || ||||||| || || |||||||| | | Sbjct 43482338 TGGCAATTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTG 43482397 Query 176854 GTAACGC 176860 | ||||| Sbjct 43482398 GAAACGC 43482404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729923140123040