Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq8 113 6e-20 seq1 113 6e-20 seq2 107 2e-18 seq9 105 8e-18 seq7 84.2 3e-11 >seq8 Length=59662532 Score = 113 bits (124), Expect = 6e-20 Identities = 274/406 (67%), Gaps = 12/406 (3%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATT---GTCAAAGCCATCCATCTCGGTG 11557 |||||||| ||||| || | || |||||| | || || ||| |||||||| || ||| Sbjct 3423398 TTAGTGGCAGCAATGACTATAACGCCAGTGT--TTCCAGTAAAA-CCATCCATTTCAGTG 3423342 Query 11558 AGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT-GGCATACCACCAGCACTGCG 11616 || || ||||| | |||||||||||| ||||||||| || | || ||| | | | Sbjct 3423341 AGCAACTGATTCAGTGTTTGTTCTCTTTCATCATTTCCTCCACCTA-TACCTGTTCCTCT 3423283 Query 11617 TTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGC 11676 | | | || || ||||| |||||||||||||| || | ||| ||| ||||| ||| Sbjct 3423282 CTTCCTTCCTACAGCATCTATCTCATCAATGAATACCAAACAAGGTGAATTTTGCTTGGC 3423223 Query 11677 GATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTT 11736 | | || | ||| | |||||| ||| || ||||| ||||||||||| | || | Sbjct 3423222 CCTGTTGAACAAATCCCTCACCCTTGAGGCCCCTACACCCACAAACATCTCAATGAACTC 3423163 Query 11737 TGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAG 11796 || |||| || ||| || || | || || || || || ||| || | Sbjct 3423162 TGATCCAGATAGGGAGAAGAAAGGAACCCCAGCCTCTCCTGCAATTGCCTTGGCCAGCAA 3423103 Query 11797 GGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC-AC 11855 |||||||| || || || || | | ||| | ||| ||| || ||||| || || Sbjct 3423102 TGTCTTTCCAGTCCCCGGAGGCCCTACCAAAAGAACCCCTTTGGGAATTTTGGCTCCAAC 3423043 Query 11856 TTC-CAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTT 11900 | ||||| ||||| |||| ||| | || || |||||||||| Sbjct 3423042 GGCAGAAAATTTCTCTGGGGT--CTTCAAGAACTCAACAATCTCTT 3422999 >seq1 Length=52205531 Score = 113 bits (124), Expect = 6e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || ||||| || |||||| || || |||||||| || Sbjct 19482602 GTGGAGCCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCCGGCATGAGGCC 19482661 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | |||| ||| || |||||||||||||| ||||| || || Sbjct 19482662 TCGCTTCTTGAGCCAGAAGATAGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCGACGCA 19482721 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 || || |||| | ||| ||||||||||| Sbjct 19482722 GGCGAAGGCAACGATGCGCTCGGCGAAGGA 19482751 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || || |||||||| || || ||||| || |||||| ||||| ||||| | ||| Sbjct 45626986 GTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGACCGGGCATCAAACC 45626927 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | |||||| || ||||||||||| ||||| || || Sbjct 45626926 GCGCTTCTTGAGCCAGAATATCGAGCAGAAGCTGCCAGAGAAGAAGATTCCCTCGACGCA 45626867 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 || || || | | ||| |||||||| ||| Sbjct 45626866 GGCGAAGGCGACGATGCGCTCGGCGAAAGAG 45626836 >seq2 Length=49040938 Score = 107 bits (118), Expect = 2e-18 Identities = 302/460 (66%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | | ||||| || ||||| || | || ||||| | | ||||| Sbjct 34691625 TCAAGAATATCTGCCCTGTTAGTTGCTGCAATGACAATGATACCAGTATTACCCTCAAAA 34691566 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | ||| || | || || ||||| |||||||| || | Sbjct 34691565 CCATCCATTTCTGTCAAAAGTTGGTTCAGGGTCTGCTCTCTTTCATCATTCCCTCC---A 34691509 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| |||| | | ||| | || || |||||||| ||||||| |||||||| || Sbjct 34691508 CCAATTCCAGTTCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 34691449 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || ||| | | || | ||| ||||| | ||||| ||||||||| Sbjct 34691448 GGGGCATTCTCTTTGGCCTTCTTGAACAAATCACGAACTCGAGAAGCACCAACACCAACA 34691389 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGG-ACATTTGATTCACCCGC 11778 |||||||| ||||| | | |||| | || | || ||| ||| | |||||| || Sbjct 34691388 AACATCTCAACAAACTCAGAACCAGA-TATTGAAAAAAAGGGAACACCAGCTTCACCAGC 34691330 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 || || ||| | ||||||||||| || ||||| ||| | ||||| | ||| Sbjct 34691329 AATAGCCTTGGCTAACAGGGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACTCCTTT 34691270 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || || ||| || | ||||| || | ||| ||||| ||||| | ||| Sbjct 34691269 AGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTTAGAAACTCCACCACCTC 34691210 Query 11899 TTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || || | ||||| | || | ||| |||||||| Sbjct 34691209 CATAAAGTCCTGCTTGGCTTCATCCACCCCAGCAACATCA 34691170 >seq9 Length=37469608 Score = 105 bits (116), Expect = 8e-18 Identities = 210/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || | | ||||| || ||||| || | || || || | | ||||| Sbjct 35454555 ATCAAGAATGTCAGCCCTGTTAGTAGCTGCAATGACAATGATACCCGTATTACCCTCAAA 35454614 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | ||| || | || |||||||| |||||||| || Sbjct 35454615 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC--- 35454671 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| |||| || | |||| | || || |||||||| ||||||| || ||||| || Sbjct 35454672 ACCAATTCCAGTACCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCA 35454731 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 ||| ||| || ||| | | || | ||||||||| | ||||| |||||||| Sbjct 35454732 TGGAGCATTCTCTTTGGCCTTCTTGAATAAATCGCGAACTCGAGAAGCACCAACACCAAC 35454791 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCG 11777 ||||||||| ||||| | | | ||| | || | ||||||||| || |||||| | Sbjct 35454792 AAACATCTCTACAAACTCAGAACCTGAG-ATTGAAAAAAATGGGACACCTGCTTCACCTG 35454850 Query 11778 CGATGGC 11784 | || || Sbjct 35454851 CAATAGC 35454857 Score = 89.7 bits (98), Expect = 6e-13 Identities = 161/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || || || ||||||||||| || ||||| | ||| || ||||| | ||| Sbjct 17262578 TGAGGCCTAGGAGTTCCAGCATTGAAAAGTGTTGGAGATGCATGGGTGAACCATCGTTGA 17262519 Query 112001 GACATCTTGTCGTATG-TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| ||| ||| | ||| || |||| || ||||| ||| ||| || || | || Sbjct 17262518 GACATCATGTGGTAAGTTCTGACAG-CAGATTCTATGTCATCCTTGTGAATCCCAACCGC 17262460 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 ||| | ||| ||||||| || ||| || || | |||| | || || || |||| Sbjct 17262459 GACTCTCATCAACATGTGTTG-GGGCCTTTCAACAACCTGCCCTTGAACC-TTCAAGAGG 17262402 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 || | |||| |||||||||| ||||| ||| || | ||| |||||| Sbjct 17262401 TAAGACCTCTCGAGGGTTTTGAACCCAAAATAATCATAGTCAAAGTCCC 17262353 Score = 84.2 bits (92), Expect = 3e-11 Identities = 248/377 (66%), Gaps = 14/377 (4%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| ||||| | || ||||| || ||||| |||||||| || | Sbjct 4469779 AAACCCATCCATCTCCGTGAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTT--CCCA 4469722 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | ||| | || || || ||||||||||||||||| ||||| Sbjct 4469721 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCGACGGCGTCAATCTCATCAATGAAAACAATG 4469662 Query 11657 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || || || | ||| || | ||||| | ||| | ||||| ||||| || Sbjct 4469661 CACGGCGCCTTATTCTTC----GCCTTCTCAAACAAATCCCTCACCCTCGACGCACCAAC 4469606 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTC 11772 || ||||||| |||||| || | || || | |||| || || || || | ||| Sbjct 4469605 CCCCACAAACAGCTCCACGAACTCTGAAGCCGCGCACGAGAAAAACGGCACTCCCGCTTC 4469546 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCG-CGAGAAGGG 11831 ||||| | || | || || || ||||| || || || || | |||| | ||||| Sbjct 4469545 CCCCGCCACAGCCCTAGCTAGAAGCGTCTTCCCGGTTCCCGG-TGGCCCGACCAGAAGAC 4469487 Query 11832 CGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCA 11891 || || ||||| ||||| || || | || || | ||| | |||||| | Sbjct 4469486 ACCCCTTCGGAATCTTCGCACCCAGCGCAGTGTACTTATCAGGGTTCTTCAAAAAATCAA 4469427 Query 11892 CAATCTCTTCAAGTTCA 11908 ||| ||||| || ||| Sbjct 4469426 CAACCTCTTGCAGCTCA 4469410 >seq7 Length=51758522 Score = 84.2 bits (92), Expect = 3e-11 Identities = 134/190 (71%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||||| ||| || || || ||||||||||||| ||| || ||| | || Sbjct 12793038 ACATATCATGGTAGTGCAATGGATGCCAAATTGCGCACATTAGTTTCAGTTGGACTTGAA 12793097 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 ||||| | ||||| ||||| ||||| || ||||| || |||||||||| |||||| Sbjct 12793098 TACTCAATTATTTCAGTACACAAGTTTGACGATTTAATTGTGCCCAAATTCTGTTGGTTG 12793157 Query 111341 CTCTTCTTGTTGCACGCATCCTT--GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 111398 || ||||| ||||| | |||||| | |||||||| || || | || |||||| Sbjct 12793158 CTTTTCTTATTGCAAGTATCCTTAAAAAAAGCATGTAAGG-GTTTCGGTTAATATCTGTG 12793216 Query 111399 ATTTGAGAAT 111408 |||| ||||| Sbjct 12793217 ATTTCAGAAT 12793226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026441916800