Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 seq9 111 2e-19 seq2 91.5 2e-13 >seq1 Length=52205531 Score = 141 bits (156), Expect = 1e-28 Identities = 308/455 (68%), Gaps = 12/455 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || ||||| || ||||||||||||||||| |||||||| | || ||| |||||| Sbjct 19482303 TACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATAAGCTCCATC 19482362 Query 129788 AAATCAAATGGGTTCT-----TTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGA 129842 |||| || ||||||| ||| | || || | | ||| |||| | ||| | Sbjct 19482363 CAATCGAACGGGTTCTGCACATTG---TACAGCTTCCCG-CAC-CCAAGCGCACCGAGCA 19482417 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGT 129902 | ||| | || ||||||||||| || |||| | |||||| || | | Sbjct 19482418 ACCTATCAGCAACAAACTCAATGTACACACTCATCAAGGCCCCGTTCATCCCCACCAACG 19482477 Query 129903 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGG 129962 || || |||||||| ||| ||| || |||| ||||| || || || |||||||| Sbjct 19482478 CGCAAGGAAGCGCGTCGCAGACAAACTCCCTCTCGATGTCAACTGCATCGCGCACGATCT 19482537 Query 129963 CGTGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAAC 130021 | | | |||| | | | || |||| | | |||| |||| | || Sbjct 19482538 CCCTCACGCGCTCCTCGGGGAGCTTGTTCCGCATGATAGAGTAGAGCAGGCACG-CGAAG 19482596 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || |||||| |||||||| |||||||||||||| || |||||| || || |||||| Sbjct 19482597 TCGCAGTGGAGCCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCCGGCATG 19482656 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || |||||||| | |||||| || | ||||| || ||||||||||| ||||| Sbjct 19482657 AGGCCTCGCTTCTTGAGCCAGAAGATAGAGCAAAAGCTTCCGGAGAAGAAGATTCCCTCG 19482716 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 || || ||||| |||| || ||||| || ||||| Sbjct 19482717 ACGCAGGCGAAGGCAACGATGCGCTCGGCGAAGGA 19482751 Score = 127 bits (140), Expect = 3e-24 Identities = 380/571 (67%), Gaps = 23/571 (4%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCC 129784 |||||| ||||| ||||| || |||||||| || ||||| | | |||||| |||| Sbjct 45627286 ATAGTCTCCAACGCGCTTTTCAAAGAAGTTGGTTTTCCCCTGGAG--TGATATAAGCTCC 45627229 Query 129785 ATAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCACTCCAATCTGTTTGAGGA 129842 || ||||||| || |||| | | || || | ||| |||| | || | Sbjct 45627228 ATCCAATCAAAGGGATTCTGAACATCGTACACCTTCCCA-CAC-CCAAGCGCACCCAGCA 45627171 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGT 129902 ||||||| || ||||||| |||| | |||| ||| |||||||| | | Sbjct 45627170 ACCGATCCGCAACAAACTCAATATACTGACTCATCAGCTCCCCATTCATACCCACCAAAG 45627111 Query 129903 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGG 129962 || || |||||||| | | || || |||| ||||| || || || ||||| || Sbjct 45627110 CGCAGGGAAGCGCGTCGCACACAAATTCCCTCTCTATGTCAACCGCGTCGCGCACAATCT 45627051 Query 129963 CGTGAATGGTCTCC---GTGCCAGGT-CTAT-TGCGCAAAGTCTTGAAGAGTTCCACGGC 130017 | | | | |||| ||| || | || | || | | || | ||||| |||| | Sbjct 45627050 CCTTCACGCGCTCCTCAGTG--AGCTTCTTTCTGAGGAGAGAGTACAAGAGG--CACG-C 45626996 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 || || ||| || || || || || || |||||||| || |||||| ||||| || Sbjct 45626995 GAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGACCGGG 45626936 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| | ||| |||||||| | |||||| |||| || || ||||||||||||||| || Sbjct 45626935 CATCAAACCGCGCTTCTTGAGCCAGAATATCGAGCAGAAGCTGCCAGAGAAGAAGATTCC 45626876 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 ||| || || ||||| || | || ||||| || || ||| || | | || | ||| Sbjct 45626875 CTCGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAAGAGTCGG---TGGCGTCGATCCA 45626819 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 || |||||||| ||||| || ||| || |||| ||| | | || || || Sbjct 45626818 GCGCAAGGCCCACTGTGCCTTCTTGGCGACGCAGGGGATGGTGTCTACGGCACGGAACAG 45626759 Query 130258 TTCCTTCTTTTCTGATGGA-TCTTTGATGTA 130287 | |||||||| | |||| ||||||||||| Sbjct 45626758 GTGGTTCTTTTC-GGTGGAGTCTTTGATGTA 45626729 >seq9 Length=37469608 Score = 111 bits (122), Expect = 2e-19 Identities = 180/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Plus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 ||||| || ||| | ||| || || || ||||||| ||| ||||| | ||||| Sbjct 35454556 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAATGACAATGATACCCGTATTACCCTCAAAT 35454615 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | Sbjct 35454616 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 35454672 Query 14216 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 ||| || | || | |||| | || || || ||||||||||| | ||||| || ||| Sbjct 35454673 CCAATTCCAGTACCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 35454732 Query 14273 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 35454733 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCGCGAACTCGAGAAGCACCAACACCAA 35454790 Query 14331 CAAACATCTCCACAAA 14346 |||||||||| ||||| Sbjct 35454791 CAAACATCTCTACAAA 35454806 Score = 93.3 bits (102), Expect = 5e-14 Identities = 273/411 (66%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| || | || || || ||||| ||||| | ||||| ||| || Sbjct 4469779 AAACCCATCCATCTCCGTGAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTCCCA-- 4469722 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | | | ||||| | | ||| | |||||||||||||| ||||| |||||||| || Sbjct 4469721 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCGACGGCGTCAATCTCATCAATGAAAACAATG 4469662 Query 14270 CATGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || || ||| | | | ||||| | ||| | ||| ||| ||||| || || Sbjct 4469661 CACGGCGCCTTATTCTTCGCCTTC-TCAAACAAATCCCTCACCCTCGACGCACCAACCCC 4469603 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 |||||||| |||||| || | | || | || || || || || | ||| || Sbjct 4469602 CACAAACAGCTCCACGAACTCTGAAGCCGCGCACGAGAAAAACGGCACTCCCGCTTCCCC 4469543 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448 ||| | || | || || || |||||||| || || ||| ||| | |||| | |||| Sbjct 4469542 CGCCACAGCCCTAGCTAGAAGCGTCTTCCCGGTTCCCGGTGGCCCGACCAGAA-GACACC 4469484 Query 14449 ACGT-GGGATCCTGGCACCACTGC-CAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACG 14506 | | || ||| | ||||| | || || ||| ||||| | || | || || || Sbjct 4469483 CCTTCGGAATCTTCGCACC-CAGCGCAGTGTACTTATCAGGGTTCTTCAAAAAATCAACA 4469425 Query 14507 ATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCACTGAAG 14557 | |||| || ||| |||||| ||| ||| | ||||||| |||| Sbjct 4469424 ACCTCTTGCAGCTCAAGCTTCGCTTGGTCTGCGCCCGCCACGTCACCGAAG 4469374 >seq2 Length=49040938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 245/369 (66%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | | | ||| |||||| ||||| | ||| || || || Sbjct 34691656 ATCAAATCGTCCTGGTCTCAATAAGGCAGAGTCAAGAATATCTGCCCTGTTAGTTGCTGC 34691597 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 ||||||| ||| || || | ||||| |||||||| || ||||| ||||| || | Sbjct 34691596 AATGACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAAAAGTTGGTTCAG 34691537 Query 14185 GGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCGTTGCTTACCGAC 14241 ||| || || | |||||||||| | |||| || | | | ||| | || || Sbjct 34691536 GGTCTGCTCTCTTTCATCATTCCCTCC---ACCAATTCCAGTTCCTCTTTGTCTTCCAAC 34691480 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA--AAG 14299 || ||||||||||| | || || || || || ||| || ||| |||| || Sbjct 34691479 AGCATCAATTTCATCAACAAAGACAATGCAAGGGGCATTCTCTTTGGC--CTTCTTGAAC 34691422 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 14359 | ||| || |||| ||||| ||||| ||||||||||| ||||| | | | | | Sbjct 34691421 AAATCACGAACTCGAGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCAG-A 34691363 Query 14360 CATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 14418 |||| | ||||| || || |||||| || || || ||| | |||||||| || Sbjct 34691362 TATTGAAAAAAAGGGAACACCAGCTTCACCAGCAATAGCCTTGGCTAACAGGGTCTTTCC 34691303 Query 14419 CGTCCCTGG 14427 || ||||| Sbjct 34691302 AGTTCCTGG 34691294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429726848480