Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 129 6e-25 seq2 91.5 2e-13 seq3 86.0 7e-12 seq9 84.2 2e-11 >seq1 Length=52205531 Score = 129 bits (142), Expect = 6e-25 Identities = 534/820 (65%), Gaps = 32/820 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||| || || |||||||||||||| | || ||| || ||||||| Sbjct 19482303 TACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATAAGCTCCATC 19482362 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 || ||||| ||||||| || ||| | ||||| | ||||| | | | | Sbjct 19482363 CAATCGAACGGGTTCTGCACATTGTACA---GCTTCCCGCACCCAAGCGCACCGAGCAAC 19482419 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 | ||| || ||||| | ||||||| |||| || | | ||| || | | | Sbjct 19482420 CTATCAGCAACAAACTCAATGTACACACTCATCAAGGCCCCGTTCATCCCCACCAACGCG 19482479 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697 || || || || ||| || |||||| ||||| | || || ||| | || |||| Sbjct 19482480 CAAGGAAGCGCGTCGCAGACAAACTCCCTCTCGATGTC--AACTGCATCGCGCACGATCT 19482537 Query 74698 TGTGAATG---TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753 | | || | || || ||| | || || | |||||| ||| | |||| | Sbjct 19482538 CCCTCACGCGCTCCTCGG---GGAGCTTGTTCCGCATGATAGAGTAGAGCAGGCACG-CG 19482593 Query 74754 AACTCCTGATGCGAGCCT-TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 || || || ||||| || || | | || | ||| || || || | ||| || || Sbjct 19482594 AAGTCGCAGTG-GAGCCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTAAGTCCCGG 19482652 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| || || |||||||| | ||| ||||| | || ||| || ||||||||| || Sbjct 19482653 CATGAGGCCTCGCTTCTTGAGCCAGAAGATAGAGCAAAAGCTTCCGGAGAAGAAGATTCC 19482712 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC-ATCCAAG 74931 ||||| || || ||||| || | ||| | ||||| | | |||| ||| ||||| Sbjct 19482713 CTCGACGCAGGCGAAGGCAACGATGCGCTCGGCGAAGGACTCGGCGGA-GTCGATCCAGC 19482771 Query 74932 TCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGAC-AGTATCGATCGCTTGGAAGAGG 74990 | ||||| | ||| || |||| ||||||| ||| || || || |||||||| Sbjct 19482772 GTAGGGCCCAGTTAGCCTTCTTGGTGAC-GCAGGGAATAGTGTCAATGGCGTGGAAGAGA 19482830 Query 74991 CTTGCCTTCTCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTCCGA 75049 | | |||||||| || || || | | || || |||| | || |||| |||| || Sbjct 19482831 CGGGTCTTCTCTTTGGAGTCTTTTATGTAGGTT-TCAAGGAGGAGGCTGTACATCTCGGA 19482889 Query 75050 ATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTA 75108 ||||| |||| || ||| ||| | ||||||| | || ||||| | | ||| | Sbjct 19482890 GTGAATGTTCTCGATGG-CGATCTGAAAGCCGTAGAAGGCGCGGGCCTCGGAGACCTGGA 19482948 Query 75109 CATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166 | ||||| ||||| | | | | || || | ||||||||| || ||||||||||| Sbjct 19482949 CCTCCTTCATGAAACGGCC--GGCAAGGTTTTCAAGGACGATGCCATCGGAGGCGGCGAA 19483006 Query 75167 AAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTT 75226 || || || || |||| || |||||||| | || || || | ||||||| | Sbjct 19483007 GAAGGCGAGGACGTGGGTGATGAAATGGCGCTCGCCATCGGTTAGAGTCTCCCAATGCCG 19483066 Query 75227 CAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 | |||| || | || | |||||| ||||||||||| Sbjct 19483067 GATGTCCTGCGAGAGGTCGACCTCCTCCGCCGTCCAGAAA 19483106 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 79619 CCAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT- 79677 ||||| ||||||| |||| | || |||| ||||||||||||||||||||||||||| Sbjct 48817067 CCAGAATGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTA 48817126 Query 79678 ACCAATTGAGCTACGAAAGCA 79698 ||||| ||||||| ||||||| Sbjct 48817127 ACCAACTGAGCTATGAAAGCA 48817147 >seq2 Length=49040938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/297 (68%), Gaps = 17/297 (6%) Strand=Plus/Minus Query 124551 TGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTG 124610 ||||||| ||| ||||||||||| | || |||||| | ||| ||||| || | | Sbjct 22447601 TGCTGCAGCATCAGCCACATGGCCTCAACATAGTCCCCAGCGAAGCCCCAATCCCTGGAG 22447542 Query 124611 GCATCCAGGTTTCCGAGCTCGA-TTGGCT-TGG---CCG-TCTTGTTCCACTCCGCCAAA 124664 || | ||||| || | || || ||| ||| ||| ||||| ||| ||||| Sbjct 22447541 GCCTGAAGGTTCCCCAAAAAGAGTTTGCTCTGGAGCCCGATCTTGATCCG----GCCAAC 22447486 Query 124665 CCCA-GTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTT 124720 || | || |||||||||||||| || |||| ||||| || ||||||||||| Sbjct 22447485 GGCACGCGTGATCTTGCGCGTCACGAAATTCTCG---CCGCGGCGAGGGGACTCGTGGTT 22447429 Query 124721 GAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCA 124780 ||| ||||||||| | || || | | ||||| | ||| |||||||| || ||| Sbjct 22447428 GAAAAGAATGCCATTGCAGGCGTAGAGTCCGTAGGCCTCACGGTAGTTGACGGTGTACCA 22447369 Query 124781 ATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 | | || | ||||| || | |||||| ||||||| ||| |||||| |||| Sbjct 22447368 GTGCGCAGCGCATTTGGAGGCGGCGTAGGGGGAGCGGGGGTGGAAGGGGGTGGTTTC 22447312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3700452 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3700511 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 3700512 TGAGCTACGAGAGCAA 3700527 >seq3 Length=52284309 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4883218 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4883277 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4883278 TGAGCTATGAAAGC 4883291 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4869727 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4869786 Query 79684 TGAGCTACGAAAG 79696 ||||||| ||||| Sbjct 4869787 TGAGCTATGAAAG 4869799 >seq9 Length=37469608 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 79627 CTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAATTG 79685 ||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| || Sbjct 13790533 CTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTG 13790592 Query 79686 AGCTACGAAAGCA 79698 ||||| ||||||| Sbjct 13790593 AGCTATGAAAGCA 13790605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547211157138400