Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3 105 6e-18 seq2 84.2 2e-11 >seq3 Length=52284309 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| |||||||| || | |||||| || || ||| ||| || || ||||||||||| Sbjct 30309789 CATGCCACCTCTTAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTATAATC 30309730 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| |||| | | || ||||| ||||| || ||||| || || | |||||| || | Sbjct 30309729 TGCAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCCGG 30309670 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | |||||||||| ||| || ||||| | | | || || ||| || Sbjct 30309669 AGGGATACCCTCTTTGTCCTGGATCTTAGCTTTGACATTATCAATAGTGTCAGACGATTC 30309610 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || | || || | || || |||| ||||| || || || ||||||| Sbjct 30309609 TACCTCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCATCT 30309557 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || || || ||||| || ||||||||||| ||||| |||| | | || Sbjct 30284439 AAAACCAAGTGCAGAGTAGATTCTTTCTGGATATTATAATCCGCAAGGGTTCTTCCATCT 30284380 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||||||||| || ||||| ||||| | ||||||||| | ||| | | ||| || ||| Sbjct 30284379 TCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCC 30284320 Query 39193 ATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 || || ||| | | | | || || |||||| |||| || || || Sbjct 30284319 TGAATCTTGGCTTTCACATTATCAATGGTGTCTGAACTCTCCACCTCCAAGGTAATGGTT 30284260 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||| || || |||||||||||||| Sbjct 30284259 TTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 30284228 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || ||||||||||| || || |||| | | || ||||||||||| || ||||| Sbjct 30378599 CTCCTTCTGAATATTATAATCCGCCAGGGTTCTTCCATCTTCAAGCTGTTTCCCAGCAAA 30378540 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| | ||||||||| | ||| | | ||| |||||| || || ||| | | Sbjct 30378539 GATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGAATCTTGGCTTTCACATT 30378480 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||||| |||||| |||| || || |||| || |||| || || || Sbjct 30378479 ATCAATGGTATCTGAACTCTCCACCTCCAAGGTAATGGTTTTCCCGGTCAAAGTCTTGAC 30378420 Query 39273 AAAGATTTGCAT 39284 |||||||||||| Sbjct 30378419 AAAGATTTGCAT 30378408 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || || | ||||| || || ||| ||| || || ||||||||||||||| Sbjct 30274355 CCACCTCTCAAACGAAGCACCAGGTGGAGGGTGGACTCCTTCTGAATATTATAATCGGCA 30274296 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | | || ||||| ||||| || ||||| || || | |||||| || | || Sbjct 30274295 AGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTCTGCTGATCTGGAGGG 30274236 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||||||| ||| || ||||| | | | || || ||| || || Sbjct 30274235 ATACCCTCTTTGTCTTGGATCTTAGCTTTGACATTATCAATGGTGTCAGACGATTCTACC 30274176 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | || || | || || |||| ||||| || || || ||||||| Sbjct 30274175 TCGAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACGAATATCTGCATCT 30274127 Score = 89.7 bits (98), Expect = 4e-13 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGT-AACACCAAATGTAGCGTGCTCTCTTTT 39099 || ||||||| || ||| || || |||| | || ||||| || || ||| || | Sbjct 30274598 ACAAAAATTTG--CATGCCACCCCT-AAGCCTCAAAACCAAGTGCAGGGTGGATTCCATC 30274542 Query 39100 TGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGA 39159 || ||||||||||||||||| |||| | | || ||||||||||| || |||||||| || Sbjct 30274541 TGAATATTATAATCGGCAAGGGTTCTTCCATCCTCAAGCTGTTTACCAGCAAATATCAGC 30274482 Query 39160 CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC 39219 | |||||| || | || | || ||| ||||| ||| || || | | | | Sbjct 30274481 CTCTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTTACATTATCAATG 30274422 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 ||||| |||||| |||| || || | ||||| |||| || || ||||| || Sbjct 30274421 GTATCTGAACTCTCCACCTCCAAGGTTATGGTCTTTCCAGTCAAAGTCTTCACAAAAATC 30274362 Query 39280 TGCAT 39284 ||||| Sbjct 30274361 TGCAT 30274357 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | ||| | || || ||| || ||||| ||||| ||||| Sbjct 30378182 CATGCCACCCCTGAGGCGAAGCACGAGGTGGAGAGTGGATTCCTTTTGGATATTGTAATC 30378123 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 |||||| || || | || || || || || || || || || || | |||||| || | Sbjct 30378122 GGCAAGAGTGCGACCATCCTCGAGTTGCTTACCAGCGAAAATCAGCCTCTGCTGATCCGG 30378063 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | ||||||||| ||| || |||| | | | || || || || Sbjct 30378062 AGGGATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGAGGATTC 30378003 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 ||| || | |||||| |||| || |||| ||||| |||||||| ||||||| ||| Sbjct 30378002 CACCTCGAGGGTGATAGTTTTGCCTGTCAAAGTTTTCACAAAGATCTGCATCTGTAC 30377946 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || | ||| | ||| | || || ||| |||||||| ||||| ||||| Sbjct 30314300 CATGCCACCCCTGAGGCGAAGCACGAGGTGGAGAGTGGATTCTTTTTGGATATTGTAATC 30314241 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 |||||| || || | || || || || || |||||||| ||||| | ||||||||| || Sbjct 30314240 GGCAAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAGATAAGTCTCTGCTGGTCAGG 30314181 Query 39173 TGGGCACGCTCTCTTTGTC 39191 |||| | | ||| ||||| Sbjct 30314180 TGGG-ATACCCTCCTTGTC 30314163 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || ||| || || || ||||||||||| ||||| || || | Sbjct 30379078 CGCAACACCAAGTGAAGAGTGGATTCCTTCTGGATATTATAATCAGCAAGGGTACGCCCA 30379019 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || ||||| ||||| | ||| || || | || | || || ||| Sbjct 30379018 TCTTCCAGCTGCTTTCCGGCAAAGATAAGCCTCTGTTGATCTGGTGGTATGCCTTCCTTG 30378959 Query 39190 TCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGT 39245 ||| ||| | | || ||| | | | | ||||| ||| ||||| |||| || Sbjct 30378958 TCC-TGAATCTTTGCTTTCACATTGTCAATTGTATCAGAGCT---TTCCACCTCCAAGGT 30378903 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| ||||| || || ||||| |||||||| Sbjct 30378902 AATGGTCTTTCCTGTCAGAGTCTTCACAAATATTTGCAT 30378864 >seq2 Length=49040938 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 7435701 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 7435642 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || ||||| ||||||||||| || | || | || ||| |||||| ||| || Sbjct 7435641 TTTCCGGCGAATATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 7435582 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || || |||||||| || | ||||| |||| ||||| Sbjct 7435581 GCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTCCCCGTA 7435522 Query 39262 AGCGTTTTAACAAAGATTTGCATC 39285 || ||||| || || || |||||| Sbjct 7435521 AGGGTTTTCACGAATATCTGCATC 7435498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429541893558404