Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq3 102 6e-17 seq7 95.1 8e-15 seq5 86.0 4e-12 >seq2 Length=49040938 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||||||||||| || || ||||| || || || || || | Sbjct 7450908 AATGCAGATATTCGTGAAAACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTC 7450967 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || || ||||| || || | || || |||| Sbjct 7450968 AGACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGAATCCCACCGGATC 7451026 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || || ||||| || || || || |||| ||||| | | ||| |||| Sbjct 7451027 AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGTCGCACCCTCGCCGACTACA 7451086 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 7451087 ACATCCAGAAGGAGTCCAC 7451105 >seq3 Length=52284309 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || ||||| ||||| ||||| || || ||| | Sbjct 30377952 ATGCAGATCTTTGTGAAAACTTTGACAGGCAAAACTATCACCCTCGAGGTGGAATCCTCT 30378011 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | |||||||||||| | || || ||||| Sbjct 30378012 GACACCATTGATAATGTCAAGGCTAAGA-TCCAGGACAAAGAAGGTATCCCTCCGGATCA 30378070 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || || ||||| || || | |||||| | | ||||||||| Sbjct 30378071 GCAGAGGCTGATTTTCGCTGGTAAGCAACTCGAGGATGGTCGCACTCTTGCCGATTACAA 30378130 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| || ||||| Sbjct 30378131 TATCCAAAAGGAATCCAC 30378148 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || || || || ||||| || || | || || || | | Sbjct 30284683 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAGAGCTC 30284742 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| |||| | || ||||||||||| | || ||||||| Sbjct 30284743 TGATACAATTGATAATGTGAAAGCAAAGA-TTCAGGACAAAGAAGGCATCCCACCAGATC 30284801 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || |||||| ||||||| | ||||| || | || |||| Sbjct 30284802 AGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACA 30284861 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || || ||||| Sbjct 30284862 ATATTCAGAAGGAATCCAC 30284880 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || | || ||||| || || ||| | || ||||| | Sbjct 30284455 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAGGTTGAAAGTTC 30284514 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | || ||||| ||||| |||| ||||||| Sbjct 30284515 TGACACCATCGATAATGTGAAGGCAAAGA-TTCAGGACAAGGAAGGCATACCACCAGATC 30284573 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || ||||| || || || |||||||| | || || | | ||||| | Sbjct 30284574 AACAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCTGATTATA 30284633 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || || ||||| | || | || || ||| | || || ||| Sbjct 30284634 ACATCCAGAAGGAATCCACTCTGCACCTGGTGTTGAGGCTTCGTGGTGGA 30284683 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || ||| | ||||||||||| || ||| | || ||||| | Sbjct 30378636 ATGCAAATTTTTGTCAAGACCTTGACGGGAAAAACCATTACTTTGGAGGTTGAAAGTTCC 30378695 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | |||| ||| || |||||||| || | || ||||| || Sbjct 30378696 GATACCATTGATAATGTAAAGGCAAAGATACAGGACAAAGAGGGGATTCCACCAGACCAG 30378755 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || || || |||||||| | || || | | ||||| ||| Sbjct 30378756 CAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCTGATTATAAC 30378815 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || || ||||| | ||||| || || ||| | || || ||| Sbjct 30378816 ATCCAGAAGGAATCCACTCTTCATTTGGTGTTGAGGCTTCGTGGTGGA 30378863 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || || || ||||| || || || | || || || | | Sbjct 30378863 AATGCAAATATTTGTGAAGACTCTGACAGGAAAGACCATTACCTTGGAGGTGGAAAGCTC 30378922 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| |||| | || ||||| ||||| |||| ||||||| Sbjct 30378923 TGATACAATTGACAATGTGAAAGCAAAGA-TTCAGGACAAGGAAGGCATACCACCAGATC 30378981 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | | || |||||||| || || |||||||| | || || | | ||||| | Sbjct 30378982 AACAGAGGCTTATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGTACCCTTGCTGATTATA 30379041 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || || ||||| Sbjct 30379042 ATATCCAGAAGGAATCCAC 30379060 >seq7 Length=51758522 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| || || || ||||| || ||||||||||| || || | | Sbjct 4236526 ATGCAGATCTTCGTTAAGACACTGACCGGAAAGACCATCACTCTCGAGGTCGAGAGCTCC 4236585 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || || ||||| ||||| | || ||||| || Sbjct 4236586 GACACTATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGACCAG 4236645 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || || || ||||| || | ||||| | | ||| |||||| Sbjct 4236646 CAACGTCTCATCTTCGCTGGAAAGCAGCTGGAGGATGGGCGCACCCTCGCCGACTACAAC 4236705 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| || || || | || ||||| Sbjct 4236706 ATTCAAAAGGAATCAACCCTTCACCTAGTT 4236735 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||||| ||||| || || || || || || || || | | Sbjct 4237437 AATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACCATTACCCTTGAGGTGGAGAGCTC 4237496 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | |||| || ||||| || || | || || || | Sbjct 4237497 TGACACCATCGACAATGTGAAGGCGAAAA-TTCAGGACAAGGAGGGCATCCCACCGGACC 4237555 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || || |||| || | | | || | | ||||||| Sbjct 4237556 AGCAGAGGTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCTGATTACA 4237615 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 4237616 ACATTCAGAAGGAGTCCAC 4237634 >seq5 Length=40819286 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| |||||| | || || ||||| ||| | || || ||||| || || ||||||||| Sbjct 8292639 GACAAGGAAGGTATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 8292580 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | ||||| | | ||||| ||||||||||| || || || | || || ||||| Sbjct 8292579 GATGGTCGCACACTTGCTGATTATAACATACAAAAGGAATCAACCCTTCACTTGGTTTTG 8292520 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | | |||||| Sbjct 8292519 AGGCTCAGGGGAGGA 8292505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006683399664