Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-16 seq9 100 4e-16 seq2 98.7 1e-15 >seq1 Length=52205531 Score = 102 bits (112), Expect = 1e-16 Identities = 228/340 (67%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || ||||| |||||||||| || | |||||| || || |||||| Sbjct 45627000 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGA 45626941 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| | || || || |||||||| ||||| | || ||| | ||||| ||||| Sbjct 45626940 CCGGGCATCAAACCGCGCTTCTTGAGCCAGAATATCG-AGCAGAAGCTGCCAGAGAAGAA 45626882 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 || || || ||| || || ||| | | ||| || || | | | || || Sbjct 45626881 GATTCCCTCGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAAGAGTCGGTGGCGTCGAT 45626822 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| || ||||| | |||||||| || || || || || |||| ||| || Sbjct 45626821 CCAGCGCAAGGCCCACTGTGCCTTCTTGGCGACGCAGGGGATGGTGTCTACGGCACGGAA 45626762 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 || ||| ||||| || ||||| | ||| || || | | || || ||||| || Sbjct 45626761 CAGGTGGTTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGGCTGTACATCTC 45626702 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 |||||| || || || || || ||||| || ||||| ||| Sbjct 45626701 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAA 45626662 Score = 100 bits (110), Expect = 4e-16 Identities = 347/537 (65%), Gaps = 6/537 (1%) Strand=Plus/Plus Query 48182 TTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGC 48241 |||||| || || || || || ||||| || || || || |||||||| || || | || Sbjct 19482629 TTCGTTGGAGAAGGTAAGTCCCGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATAGA-GC 19482687 Query 48242 GAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGT 48300 |||| | || || ||||| || || || ||| || || || | | ||| || Sbjct 19482688 AAAAGCTTCCGGAGAAGAAGATTCCCTCGACGCAGGCGAAGGCAACGATGCGCTCGGCGA 19482747 Query 48301 A--ACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 | ||| | || || ||||| ||| | ||||| | ||||||||| | || || || Sbjct 19482748 AGGACTCGG--CGGAGTCGATCCAGCGTAGGGCCCAGTTAGCCTTCTTGGTGACGCAGGG 19482805 Query 48359 CATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATC 48418 || || || || || | |||||| | | || || ||| ||||| | ||| || || Sbjct 19482806 AATAGTGTCAATGGCGTGGAAGAGACGGGTCTTCTCTTTGGAGTCTTTTATGTAGGTTTC 19482865 Query 48419 TATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 | | || || ||||| ||||||||||| || || || || |||||||| ||||| || Sbjct 19482866 AAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCGATGGCGATCTGAAAGCCGTAGAA 19482925 Query 48479 ACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTAC 48538 | || || | || ||| |||||| | || || | || | || ||| || Sbjct 19482926 GGCGCGGGCCTCGGAGACCTGGACCTCCTTCATGAAACGGCCGGCAAGGTTTTCAAGGAC 19482985 Query 48539 TATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGA 48598 || ||||| || || || || || | || || | || |||| ||| Sbjct 19482986 GATGCCATCGGAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAATGGCGCTCGCCATC 19483045 Query 48599 AGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 48658 || || | | ||| | ||| || | || | || || || || || ||||| || Sbjct 19483046 GGTTAGAGTCTCCCAATGCCGGATGTCCTGCGAGAGGTCGACCTCCTCCGCCGTCCAGAA 19483105 Query 48659 TGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 || || || ||||| || ||||| | ||| || | ||||||||||||||| || Sbjct 19483106 AGAGGCTTCAGCTTTCTTGTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACAT 19483162 >seq9 Length=37469608 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| ||||| || | ||| ||||||||||| || |||||| || ||| | | | Sbjct 17262567 AGTTCCAGCATTGAAAAGTGTTGGAGATGCATGGGTGAACCATCGTTGAGACATCATGTG 17262508 Query 78458 GTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| ||| | ||| ||||||||||| | ||| ||||| || ||||| || | ||||| Sbjct 17262507 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTG-TGAATCCCAACCGCGACTCTCATCA 17262449 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 |||| || || || |||||||| || | | ||||| | ||| || | || | Sbjct 17262448 ACATGTGTTGGGGCCTTTCAACAACCTGCCCTTGAACCTTCAAGAGGTAAGACCTCTCGA 17262389 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| || |||||||| | || |||||| || || ||||| || Sbjct 17262388 GGGTTTTGAACCCAAAATAATCATAGTCAAAGTCCCTGTCATAAATTAT 17262340 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 |||||||||||| || || || |||||||| || |||||| ||| |||| || Sbjct 17263392 TCTCTTTCATATCGATGGTAAAGTTCCTCAAATTCCTCACCCCAACAATCTGCCAAACCC 17263333 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||||| ||||| | ||| ||||| | |||| || ||||| || ||||||| Sbjct 17263332 GGTGCTTCATTGGGGCAAAACAAAGACCATTGTCCATTACTCTGAACTCTTTCCATAAAG 17263273 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||||| | ||| ||||| ||| |||||||| Sbjct 17263272 AGATCAGGCACCCAAAGAGCGTAAAACAGATCTCG 17263238 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || |||||||| | ||| | ||| || | ||| | || | |||||||||| ||||||| Sbjct 17262933 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGTAACATTGGAACAATACCG 17262874 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || || |||||||| ||| ||||||||| || | || ||||| || | || Sbjct 17262873 TTGGACGTCCCATTTGTCCCACGAATATAACTACCCGTAGCACGAATGTTGTGGACAGAG 17262814 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | ||||||||||| || || || | || || ||||| || || || || Sbjct 17262813 ACACCTATTCCTCCAGCTGATTTGCTAATGATGGCACACTCCTTCAAAGTTTCATATATC 17262754 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 |||||||| || ||||| ||||| | || || |||||| Sbjct 17262753 CCCTCTATGCTATCATCATTCATGCACACGAGGAAGCAGCTA 17262712 >seq2 Length=49040938 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 |||||||| || ||||| || || |||||||| || |||||| |||| |||| || Sbjct 43314294 TCTCTTTCGTACTGAGTGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCCAAACCT 43314353 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAAA 78016 || ||||||| ||||| | ||| ||||| | |||| | | || ||||| | |||||| Sbjct 43314354 GGAGATTCATTGGGGCAAAACAAAGACCATTGTCCAT-TGCTTTGAACTCTGTCCATAAA 43314412 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||| || | ||| |||||| ||| | ||||| | | ||| ||||| Sbjct 43314413 GAGATCGGGCACCCAAAGAGCATAAAACAAATCTCTAGCACGATGCTCTTC 43314463 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||||||| || | || ||||||||||| || |||||| || ||| | | || | Sbjct 43315123 GTTCCTGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATGG 43315182 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || || | | ||| || || ||||| || |||||| || || || || | ||||||| Sbjct 43315183 TAAGTCTGGACAGCAGAGTCAATGTCATCTTTATGAATCCCAACAGCAACCCTCATCAAC 43315242 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || || ||||| || || ||| | | || || | ||| || | |||| Sbjct 43315243 ATGTGTTGTGGTCTCTCCACAACCTTTCCTTGAACCTTTAAGAGGTAAGACCTCTCCAGG 43315302 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | ||| |||||| || || || || || Sbjct 43315303 GTTTTGAAACCAAAGTAATCATATTCAAAGTCCCTGTCATAGATTAT 43315349 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| | || | || |||||||| |||||| Sbjct 43314767 CCCCCTTGATCAACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAACAATACCA 43314826 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||| ||| || ||||| || | || |||||||| || || Sbjct 43314827 TTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGAA 43314886 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || |||||| || || || || Sbjct 43314887 ACACCAATTCCTCCAGCTGATTTGCTAATGATAGCACACTCTTTCAAAGTGTCATATATT 43314946 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||||||||| ||||| ||||| | ||| || || ||| Sbjct 43314947 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 43314988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662652181120