Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 116 5e-21 seq9 113 6e-20 >seq2 Length=49040938 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | || |||||||| ||| || Sbjct 43314767 CCCCCTTGATCAACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAACAATACCA 43314826 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| || ||||| || ||||||||||| || ||| Sbjct 43314827 TTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGAA 43314886 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| |||||| |||||||| || Sbjct 43314887 ACACCAATTCCTCCAGCTGATTTGCTAATGATAGCACACTCTTTCAAAGTGTCATATATT 43314946 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||||||||||||||| ||||| | ||| || || ||| Sbjct 43314947 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 43314988 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | || ||||||||||||||||||||| || ||| | | || | Sbjct 43315123 GTTCCTGCATTGAAAAGAGTTGGAGATGCATGAGTGAACCATCGTTGAGACATCAAATGG 43315182 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || || | | | | | || || || || |||||| || ||||| || | ||||||| Sbjct 43315183 TAAGTCTGGACAGCAGAGTCAATGTCATCTTTATGAATCCCAACAGCAACCCTCATCAAC 43315242 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || |||| || ||| ||| | | || || | ||| || | |||| Sbjct 43315243 ATGTGTTGTGGTCTCTCCACAACCTTTCCTTGAACCTTTAAGAGGTAAGACCTCTCCAGG 43315302 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | ||| |||||| || || || || || Sbjct 43315303 GTTTTGAAACCAAAGTAATCATATTCAAAGTCCCTGTCATAGATTAT 43315349 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||| || || || || | |||||||| || |||||| |||| ||||||| Sbjct 43314294 TCTCTTTCGTACTGAGTGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCCAAACCT 43314353 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAAA 76611 ||| ||||||| || || | ||| ||||| | |||| | | || ||| | | |||||| Sbjct 43314354 GGAGATTCATTGGGGCAAAACAAAGACCATTGTCCAT-TGCTTTGAACTCTGTCCATAAA 43314412 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 |||||| || | ||| |||||| ||| | ||||| Sbjct 43314413 GAGATCGGGCACCCAAAGAGCATAAAACAAATCTC 43314447 >seq9 Length=37469608 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | |||||| | ||| | || | |||||||||| ||| ||| Sbjct 17262933 CCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGTAACATTGGAACAATACCG 17262874 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||| ||| ||||||||| || |||||||| || | ||| Sbjct 17262873 TTGGACGTCCCATTTGTCCCACGAATATAACTACCCGTAGCACGAATGTTGTGGACAGAG 17262814 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||||||||||| || ||| || | ||||| ||||| || ||||| || Sbjct 17262813 ACACCTATTCCTCCAGCTGATTTGCTAATGATGGCACACTCCTTCAAAGTTTCATATATC 17262754 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 |||||||| |||||||| ||||| | || || |||||| Sbjct 17262753 CCCTCTATGCTATCATCATTCATGCACACGAGGAAGCAGCTA 17262712 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| ||||| || | ||| ||||||||||| ||||||||| || ||| | | | Sbjct 17262567 AGTTCCAGCATTGAAAAGTGTTGGAGATGCATGGGTGAACCATCGTTGAGACATCATGTG 17262508 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| ||| | | | | |||||| || | ||| ||||| || || ||||| | ||||| Sbjct 17262507 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTG-TGAATCCCAACCGCGACTCTCATCA 17262449 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||| || || || | ||| ||| || | | ||||| | ||| || | || | Sbjct 17262448 ACATGTGTTGGGGCCTTTCAACAACCTGCCCTTGAACCTTCAAGAGGTAAGACCTCTCGA 17262389 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || |||||||| | || |||||| || || ||||| || Sbjct 17262388 GGGTTTTGAACCCAAAATAATCATAGTCAAAGTCCCTGTCATAAATTAT 17262340 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGT--GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAAC 76550 |||||||||||| | ||| | || |||||||| || |||||| ||| |||||| Sbjct 17263392 TCTCTTTCATATCGATGGTAAAGTTCC--TCAAATTCCTCACCCCAACAATCTGCCAAAC 17263335 Query 76551 CAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAA 76610 | || |||||| || || | ||| ||||| | |||| || ||| | || ||||| Sbjct 17263334 CCGGTGCTTCATTGGGGCAAAACAAAGACCATTGTCCATTACTCTGAACTCTTTCCATAA 17263275 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||||| | ||| ||||| ||| |||||||| Sbjct 17263274 AGAGATCAGGCACCCAAAGAGCGTAAAACAGATCTCG 17263238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712928090530560