Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq9 197 2e-45 seq6 161 1e-34 seq7 145 9e-30 seq8 125 9e-24 seq1 107 2e-18 seq11 93.3 5e-14 >seq9 Length=37469608 Score = 197 bits (218), Expect = 2e-45 Identities = 519/786 (66%), Gaps = 26/786 (3%) Strand=Plus/Plus Query 183254 TGATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||||||| | | |||| | |||| | || || | || || ||| ||| | Sbjct 1917772 TGATGATTCCTATTGTGTTAACCACAACTTTTGTATTTATTATCGCTTTTATCGTTGCCC 1917831 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| ||||| | || || || | ||| || ||| ||| || || | |||||||||| Sbjct 1917832 CTCCAGTGGATAATGATGGTATTCACGAGCCTGTTTTTGGATCCCTACTTTATGGAAACA 1917891 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | ||||| |||||||| | ||| | ||| || || | | || || ||||| | Sbjct 1917892 ATATCATTTCTGGTGCGACTATTCATACTTTTGCGGCTATAGATTTGCATTTTTATCCTA 1917951 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | ||||||| | | | ||||| || || || |||| |||||||| |||| | | Sbjct 1917952 TATGGGAAGTGACTTTTGTTGATGAATGCCTATACAACGACGGTCCTTATGAACTAATTG 1918011 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAA-TTGTCTTAC 183552 | | || ||| | || | || ||||||||||||||||| |||||| || ||| Sbjct 1918012 TTCTACATTTCTTACTTAGTGTAGCTTGCTACATGGGTCGTGAATGGGAACTTAACTT-T 1918070 Query 183553 CGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACC 183612 ||| | ||||||| || |||||| |||||| ||| | |||| ||| |||| | Sbjct 1918071 CGTTTGGGTATGCATCATTGGATTGCTGTTGCATATTCAACTCCTGATGCAGCTGTTATT 1918130 Query 183613 GCTGTCTTCCTGGTCTATCCTTTCGGTCAAGG-TTCTTTTAGTGATGGTATGCCCCTGGG 183671 | ||| ||| || |||||||| | |||||||| ||||| | ||||| ||||| | || Sbjct 1918131 GTTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCG-GATGGAATGCCTTTAGG 1918189 Query 183672 TATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCA 183731 || ||| || || || | |||| |||| || || ||||| || || || ||||| Sbjct 1918190 AATTTATGGTACTTTCAATTTTATGATTGTATTTCAGATTGAGCATAATATTCTTATGCA 1918249 Query 183732 CCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCA 183791 | || ||| || | |||| ||||||| || || || || |||||||| || | Sbjct 1918250 TCAATTTCACGTGTTAAGTGTGACTGGTGTATTTGGCAACTCCCTATTCAGTGCTATAAA 1918309 Query 183792 CGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTA 183851 | ||| | || |||| || || | ||| |||| || | Sbjct 1918310 TGATTCCTTAGTAACTTTCTACCT------------TAATGAATCTG------CTAATGA 1918351 Query 183852 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTT 183911 |||||||| || |||||| | || | | ||| | ||| | |||||||||| || || Sbjct 1918352 AGGTTACAAATTTGGTCAAAAGGACAAAATCTATGATATTATAGCTGCTCATGATTATTT 1918411 Query 183912 TGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCT 183971 || | ||||||| || ||||| || || |||||||||| | || | || ||||| Sbjct 1918412 TGTCGGATTGATCTTTCAATATGCAAGTTTCAATAATTCTCGTT-TTTTAATTTTTTCCT 1918470 Query 183972 TGCTGCTTGGCCAGTGGTCGGCATCTGG--TTTACTGCTCTTGGTGTTAGCACTATGGCA 184029 | || |||| | || | || || ||| |||| || | | || | | ||||||| | Sbjct 1918471 AGTTGTTTGG-CTGTAATAGGTATTTGGTTTTTATTGTTTTATGTATCAACACTATGACT 1918529 Query 184030 TTTAAC 184035 || ||| Sbjct 1918530 TTCAAC 1918535 >seq6 Length=31977256 Score = 161 bits (178), Expect = 1e-34 Identities = 412/618 (67%), Gaps = 22/618 (4%) Strand=Plus/Plus Query 186342 AATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCT 186401 |||| ||||| || || ||||| || | | | |||||| ||||||||| || || || Sbjct 21888401 AATGTAATTGCATTCTCAGGTCCAATTGTTATTTTTGTTTATGTATTCCTTATTTATCCA 21888460 Query 186402 CTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTC 186461 || || |||| || ||||| ||||| ||| | ||||| | ||| | || Sbjct 21888461 CTGGGTCAGTTTGGTTGATTCTTTGCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATC 21888520 Query 186462 CTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTA 186521 | | || ||||| |||| || | ||||| || || ||||| || ||| |||| || Sbjct 21888521 ATCATATTTTTCCAAAGATTTCATACTTGGACATTAAACCCATTTCATATGCTGGGAGTT 21888580 Query 186522 G-CAG-GTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATA 186579 | || |||| | |||| ||| || || | || || ||||||| || ||||||| || Sbjct 21888581 GTCATTGTAT--TGGGTGTTGCACTACTATGCGCTATTCATGGTGCAACGGTAGAAAGTA 21888638 Query 186580 CTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAG 186639 || | | ||||||||| || | ||| ||||| || || | | || ||| | Sbjct 21888639 CTTTATTTGAAGATGGTGATGGTGAAAATACATTTTGTGCTTTTAACCCAACCCAACCCG 21888698 Query 186640 AAGAAA-CCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCG 186698 || ||| ||||||| ||| | |||| || | || ||||| || ||||| || ||| Sbjct 21888699 AAAAAAACCTATTCAATGATTACTGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTT 21888758 Query 186699 TTTAGC-AATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTG 186757 ||| | ||||||| |||| | ||||| || ||| | ||||| || || | || | || Sbjct 21888759 TTTCTCTAATAAGCATTGGTTACATTTATTTATGTTGTTTGTACCAGTAACTCGTTTATG 21888818 Query 186758 GACC--TCTTCCATTGGCATTATTGGTCTTGCTCTT-AACCTTCGTGCTTATGACTTTGT 186814 | | ||| |||| || ||||| | | ||| ||||| ||||||||||| || || Sbjct 21888819 AATGAGTGTTC--TTGGGATAGTTGGT-TCGTCCTTGAACCTACGTGCTTATGATTTCGT 21888875 Query 186815 AAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATAT 186874 ||| || | | ||| ||| || |||| || || || || ||||| Sbjct 21888876 TTCTCAAGAAATCTGTGCAATAGA----------TTTAAGACTTTATACACTAAAAATAT 21888925 Query 186875 CCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAACTT 186934 | || || |||||| | ||||| |||||| || | |||| | ||||||||||| Sbjct 21888926 TTTCTTAAACGAAGGTATTCGTGCATGGATGACAACTCAAAATCAGTCTCATGAAAACTT 21888985 Query 186935 TGTATTTCCTGAAGAAGT 186952 | |||| | |||||| || Sbjct 21888986 TATATTCCTTGAAGAGGT 21889003 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 170991 GAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGT 171050 || ||| ||| |||||||||||||| || |||| ||| |||| | || || || Sbjct 31665047 GATGATGCATACATTCTTGATGCTGCAGAGGAAGAAGGCATTGACCTTCCTTACTCATGC 31665106 Query 171051 CGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCC 171110 | |||||| |||| || | |||||||| ||| ||| | |||| || || || || Sbjct 31665107 AGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGGTGGCCAAGTGGACCAGTCT 31665166 Query 171111 GATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCA 171170 ||| ||||||||||| || || ||||| ||| || |||| |||||||| | Sbjct 31665167 GATGGTAACTTCCTTGATGACGACCAAATTGAGCAAGGCTTTGTTCTCACCTGCGTTGCT 31665226 Query 171171 TATCCTACAAGTGATTGTGTAATCTTGACTGAACAGGAAGAG 171212 ||||| || |||| ||| || | ||| | |||| ||| Sbjct 31665227 TATCCCACTTCTGATGTTGTTATTGTCACTCACAAGGAGGAG 31665268 Score = 82.4 bits (90), Expect = 9e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 170991 GAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGT 171050 || ||| ||| |||||||||||||| || |||| ||| |||| | || || || Sbjct 31674083 GATGATGCATACATTCTTGATGCTGCAGAGGAAGAAGGCATTGACCTTCCTTACTCATGC 31674142 Query 171051 CGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCC 171110 | |||||| |||| || | |||||||| ||| ||| | |||| || || || || Sbjct 31674143 AGGGCTGGTTCTTGCTCTTCATGTGCTGGCAAAGTTGTGGGTGGCCAAGTGGACCAGTCT 31674202 Query 171111 GATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCA 171170 ||| ||||||||||| || || |||||| ||| || |||| ||||| || | Sbjct 31674203 GATGGTAACTTCCTTGATGACGACCAAATTGAACAAGGCTTTGTTCTCACCTGTGTTGCT 31674262 Query 171171 TATCCTAC 171178 ||||| || Sbjct 31674263 TATCCCAC 31674270 >seq7 Length=51758522 Score = 145 bits (160), Expect = 9e-30 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 183520 TGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGT 183579 ||||||||||||||||| || ||| | || ||||| ||||||||||||||||| | Sbjct 47750126 TGCTACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCT 47750185 Query 183580 GTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGT 183639 ||||| ||| || |||||||| || || || ||||| ||| || |||||||| | ||| Sbjct 47750186 GTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGT 47750245 Query 183640 CAAGG-TTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCT 183698 ||||| ||||| | ||||||||||| | || || ||| || || || | |||| | Sbjct 47750246 CAAGGAAGCTTTTCG-GATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGAT 47750304 Query 183699 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 183737 ||| || || || ||||| || || || ||||| || || Sbjct 47750305 TGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq8 Length=59662532 Score = 125 bits (138), Expect = 9e-24 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 184043 GTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACCTGGGCAG 184102 ||||||| |||||||| ||| | ||||| ||||||||||||| | || |||||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 184103 ACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACT 184162 | || | ||||| ||| ||||| |||||||| ||||| || ||||||||||| || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 184163 TCCCTCTCGACCTTGCTGC 184181 ||||||| || || ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 >seq1 Length=52205531 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 186672 TTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATG 186731 || ||||| || ||||| || |||| ||| |||||| |||||| | |||||||| ||| Sbjct 38350084 TTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATG 38350143 Query 186732 CTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTT 186791 | ||||| || || | ||| | |||| | | |||| | | ||| | || || Sbjct 38350144 TTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCCCTG 38350203 Query 186792 AACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTC 186851 ||| | ||||||||||| || || ||| || | | ||||| || |||||||| || Sbjct 38350204 AACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTT 38350263 Query 186852 GAGACGTTCTATACCAAGAATATCCTATT 186880 ||||| ||||| ||||| ||||| || || Sbjct 38350264 GAGACTTTCTACACCAAAAATATTCTCTT 38350292 >seq11 Length=50367376 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 170991 GAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGT 171050 || ||| |||||| || ||||| || || || || ||| |||| | || || || Sbjct 9650241 GATGATACATATATCCTAGATGCAGCAGAGGATGCTGGAGTTGAACTTCCTTACTCCTGC 9650300 Query 171051 CGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCC 171110 || || || ||||| || |||||||||||||| |||| ||| || || ||||| || Sbjct 9650301 CGCGCGGGAGCTTGCTCTACCTGTGCTGGGAAGATTGTTGCTGGCTCAGTGGATCAGTCT 9650360 Query 171111 GATCAATCTTTCCTTGATGATGATCAGATTGAA-TCAGGTTTCATTCTGACCTGCGTCTC 171169 ||| || ||||||||||| | || | |||| ||| || | || ||||| |||| Sbjct 9650361 GATGGCTCATTCCTTGATGACAACCA-ACTGAAGGAAGGCTTTGTACTTACCTGTATCTC 9650419 Query 171170 ATATCCTACAAGTGATTGTGTAATCTTGACTGAACAGGAA-GAGAAC 171215 ||||| || ||||||||||| ||| | ||||| |||||| Sbjct 9650420 CTATCCAACTGCAGATTGTGTAATTGAAACTCACAAGGAAGGAGAAC 9650466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622064894676960