Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq9 206 3e-48 seq6 172 6e-38 seq7 158 1e-33 seq2 136 4e-27 seq1 118 1e-21 seq8 107 2e-18 seq4 89.7 6e-13 >seq9 Length=37469608 Score = 206 bits (228), Expect = 3e-48 Identities = 349/502 (70%), Gaps = 4/502 (1%) Strand=Plus/Plus Query 164021 TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTC 164080 || || ||||| || |||| ||| ||||| ||||| | ||||| || | ||| || || Sbjct 1917807 TTTATTATCGCTTTTATCGTTGCCCCTCCAGTGGATAATGATGGTATTCACGAGCCTGTT 1917866 Query 164081 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 164140 ||| || || | ||||||||||| ||||| |||||||| ||| | | ||| | Sbjct 1917867 TTTGGATCCCTACTTTATGGAAACAATATCATTTCTGGTGCGACTATTCATACTTTTGCG 1917926 Query 164141 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTAC 164200 ||||| | | |||| || || || || ||||||| | | | || ||||| || ||| Sbjct 1917927 GCTATAGATTTGCATTTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATGCCTATAC 1917986 Query 164201 AACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCAT--CTATGCTTACA 164258 |||| ||||||| |||| |||| | || ||| | || | | || |||| ||| Sbjct 1917987 AACGACGGTCCTTATGAACTAATTGTTCTACATTTCTTACTTAGTGTAGCT-TGCT-ACA 1918044 Query 164259 TGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCAT 164318 |||||||||| ||||||||| | ||| | ||||||| || ||||||| || |||| Sbjct 1918045 TGGGTCGTGAATGGGAACTTAACTTTCGTTTGGGTATGCATCATTGGATTGCTGTTGCAT 1918104 Query 164319 ACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTT 164378 | || |||||| || || | | || || ||| || |||||||| | |||||||| Sbjct 1918105 ATTCAACTCCTGATGCAGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGGTCAAGGAA 1918164 Query 164379 CTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCC 164438 || || |||| ||||||| | || || | ||| || ||||| | ||| | || || | Sbjct 1918165 GCTTTTCGGATGGAATGCCTTTAGGAATTTATGGTACTTTCAATTTTATGATTGTATTTC 1918224 Query 164439 AGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTG 164498 || |||||| || || || ||||| | || || || | | || | ||||| |||| Sbjct 1918225 AGATTGAGCATAATATTCTTATGCATCAATTTCACGTGTTAAGTGTGACTGGTGTATTTG 1918284 Query 164499 GCGGTTCTCTGTTCAGTGCAAT 164520 || || || |||||||| || Sbjct 1918285 GCAACTCCCTATTCAGTGCTAT 1918306 >seq6 Length=31977256 Score = 172 bits (190), Expect = 6e-38 Identities = 470/712 (66%), Gaps = 21/712 (3%) Strand=Plus/Plus Query 165441 TGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTT 165500 ||||||||||| | ||||| || || |||| | | ||| ||| |||| | | || | | Sbjct 21888305 TGGACTTTTGTTGTTCTCCATGGTGCTTTTGGATTAATACGTTCCATGTTACATCAATCT 21888364 Query 165501 GAACTGGCACGACTTATCGGTATTCGTCCTTACAATGCT---ATTGCTTTCTCTGGTCCT 165557 ||||| || | | || | | | ||||| ||| | ||||| ||||| ||||| Sbjct 21888365 GAACTTGCTCAATTTTTTCAATTACAACCTTATAATAATGTAATTGCATTCTCAGGTCCA 21888424 Query 165558 ATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTC 165617 |||| | | || ||| ||| || ||||| ||||| ||||| || | || ||||| Sbjct 21888425 ATTGTTATTTTTGTTTATGTATTCCTTATTTATCCACTGGGTCAGTTTGGTTGATTCTTT 21888484 Query 165618 GCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCAT 165677 || || || | ||||| | || | | || | | || ||||| | || ||| Sbjct 21888485 GCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATCATCATATTTTTCCAAAGATTTCAT 21888544 Query 165678 AACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTG 165737 | ||||| | || || ||||| ||| |||| || | | | || || | ||| | Sbjct 21888545 ACTTGGACATTAAACCCATTTCATATGCTGGGAGTTGTCATTGTATTGGGTGTTGCACTA 21888604 Query 165738 CTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCA 165797 || | || |||||||||| || ||||| | |||||| | |||||||||||| | | Sbjct 21888605 CTATGCGCTATTCATGGTGCAACGGTAGAAAGTACTTTATTTGAAGATGGTGATGGTGAA 21888664 Query 165798 AACACTTTCAAAGCATTTGATAGTACTCA---GGAAGAGGAAACTTATTCCATGGTCACT 165854 || || || || ||| | || || ||| | |||| ||||| ||| | ||| Sbjct 21888665 AATACATTTTGTGCTTTTAACCCAACCCAACCCGAAAA--AAACCTATTCAATGATTACT 21888722 Query 165855 GCTAACCGTTTCTGGTCTCAGATTTTTGGTATTG-CTTTCAGCAATAAGCGTTGGCTTCA 165913 | ||| || || ||||| || || ||||| ||| |||| ||||||| |||| | || Sbjct 21888723 GTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTTTTTCTCTAATAAGCATTGGTTACA 21888782 Query 165914 CTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGG 165973 || |||||| | ||||| || || | | | || | ||| | |||| || |||| Sbjct 21888783 TTTATTTATGTTGTTTGTACCAGTAACTCGTTTATGAATGAGTGTTCTTGGGATAGTTGG 21888842 Query 165974 TCTCG-CACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGG 166032 | ||| | | || || |||||||||||||| || ||||| || || ||| | Sbjct 21888843 T-TCGTCCTTGAACCTACGTGCTTATGATTTCGTTTCTCAAGAAAT--------CTGTGC 21888893 Query 166033 ATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCT 166092 | ||| ||| | || || || || ||||| || || | || ||||| | ||||| | Sbjct 21888894 A-ATAGA-TTTAAGACTTTATACACTAAAAATATTTTCTTAAACGAAGGTATTCGTGCAT 21888951 Query 166093 GGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGT 166144 || || | || | | || ||||||| |||||| | |||| |||||| || Sbjct 21888952 GGATGACAACTCAAAATCAGTCTCATGAAAACTTTATATTCCTTGAAGAGGT 21889003 >seq7 Length=51758522 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 164255 TACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTA 164314 |||||||||||||| || |||||| || ||||| |||||||||||||||||| || Sbjct 47750129 TACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTT 47750188 Query 164315 GCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAA 164374 ||||| || |||||||| || || || | ||| || ||| || |||||||| | |||||| Sbjct 47750189 GCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAA 47750248 Query 164375 GGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTC 164434 || || || |||| |||||| | || || ||||| || ||||| | ||| | || Sbjct 47750249 GGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTA 47750308 Query 164435 TTCCAGGCTGAGCACAACATCCTCATGCACCCCTT 164469 || ||||||||||| || || || ||||| || || Sbjct 47750309 TTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq2 Length=49040938 Score = 136 bits (150), Expect = 4e-27 Identities = 235/338 (70%), Gaps = 15/338 (4%) Strand=Plus/Plus Query 165834 GAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTC 165893 ||||||||||| ||||| |||||| || || ||||| || || ||||| ||||||| Sbjct 27893026 GAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT 27893083 Query 165894 AGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACA 165953 |||| | || ||||||||| | ||||| || || || || | |||| Sbjct 27893084 TCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGATG 27893133 Query 165954 AGTTCTATTGGTATCATTGGTCTCGCACTCAATCTT-CGTGCTTATGATTTTGTGTCTCA 166012 ||| || || | || | ||| || || | ||| |||||||||||||| || ||||| Sbjct 27893134 AGTGCTCTTAGGATAGTCGGTTAGGC-CTTGACCTTACGTGCTTATGATTTCGTTTCTCA 27893192 Query 166013 GGAGA-TTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCC 166071 || | || | || || || ||||| || ||||| | || || || ||||| || ||| Sbjct 27893193 AGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCTCT 27893252 Query 166072 TTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGT 166131 | || ||||| | |||| ||| | || || ||| || | |||||| ||| || | | Sbjct 27893253 TAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTATAT 27893312 Query 166132 TCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 ||||||| || || | ||| | || ||||| |||||| Sbjct 27893313 TCCCTGAGGAGGTTCTACCACGTGGTAACGCTCTTTAA 27893350 >seq1 Length=52205531 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 165861 CGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTT 165920 || || ||||| || || ||||| ||||||| |||||| |||||| | || |||||| Sbjct 38350081 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 38350140 Query 165921 ATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCA 165980 ||| | ||||| || || | || | |||| ||| || |||| | | ||| | || Sbjct 38350141 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGGCC 38350200 Query 165981 CTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAG 166040 || || | |||||||||||||| || ||||| || || | || || || ||||| || Sbjct 38350201 CTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 38350260 Query 166041 TTTGAAACGTTCTATACGAAAAACATCCTC 166070 ||||| || ||||| || ||||| || ||| Sbjct 38350261 TTTGAGACTTTCTACACCAAAAATATTCTC 38350290 >seq8 Length=59662532 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 164775 GTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAG 164834 |||| || |||||||| ||| | | ||| |||| |||||||| | || |||||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 164835 ACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACT 164894 | || | ||||| ||| || || |||||||| ||||| || ||||||||||| || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 164895 TCCCTCTCGACCTTGCTGC 164913 ||||||| || || ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/257 (68%), Gaps = 11/257 (4%) Strand=Plus/Minus Query 165843 TCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAG 165902 || ||||| |||||||| || || ||||| || || ||||| ||||||| Sbjct 1232871 TCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT--------- 1232821 Query 165903 CGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATT 165962 | |||| | || ||||||||| | ||||| || || | || | || | ||| || || Sbjct 1232820 CATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGAGTGCTCTT 1232761 Query 165963 GGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGA 166022 || | | ||| | || | || | ||||||||||||| || ||||| || || | Sbjct 1232760 GGGGTGGTCGGTTTGGCCGTGAACTTATGTGCTTATGATTTCGTTTCTCAAGAAATCCGC 1232701 Query 166023 GCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGA 166082 || || || |||| || ||||| || ||| | | ||||| || || ||||| |||| Sbjct 1232700 GCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTCT-CTTAA-AAAGGT 1232643 Query 166083 CTCCGTGCCTGGTTGGC 166099 | ||||| ||| |||| Sbjct 1232642 ATTCGTGCGTGGATGGC 1232626 >seq4 Length=45960019 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/182 (72%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 165990 CGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGC-TGCTGAGGATCCAGAGTTTGAAAC 166048 |||||||||||||| || ||||| || || | || || | ||| | || ||||| || Sbjct 43482232 CGTGCTTATGATTTCGTTTCTCAAGAAATCCGTGCATG--AAAGATTCTGAATTTGATAC 43482289 Query 166049 GTTCTATAC-GAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAG 166107 || || || ||||| || ||| | || ||||| | ||||| ||| |||| | || Sbjct 43482290 TTTGTACACAAAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCAATTCAAG 43482349 Query 166108 ACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTT 166167 | || |||||||| ||| || | |||||||| || || | ||| | || ||||| |||| Sbjct 43482350 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 43482409 Query 166168 AA 166169 || Sbjct 43482410 AA 43482411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557649464758560