Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaseolus_20vulgaris_20[refseq_20GCF_5F000499845.1_202013-11-29] 708 sequences; 521,076,696 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq6 210 3e-49 seq2 150 2e-31 seq9 141 1e-28 seq7 131 2e-25 seq1 123 3e-23 seq8 120 4e-22 seq4 107 2e-18 >seq6 Length=31977256 Score = 210 bits (232), Expect = 3e-49 Identities = 427/627 (68%), Gaps = 18/627 (3%) Strand=Plus/Plus Query 170976 AATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCT 171035 |||| ||| || ||||| ||||| || | | | ||||| || ||||| || ||||| Sbjct 21888401 AATGTAATTGCATTCTCAGGTCCAATTGTTATTTTTGTTTATGTATTCCTTATTTATCCA 21888460 Query 171036 CTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTC 171095 || || |||| |||| ||||| || ||| ||| | ||||| | || | || Sbjct 21888461 CTGGGTCAGTTTGGTTGATTCTTTGCTCCTAGTTTTAATGGAGCAGCTAATTTTCAAATC 21888520 Query 171096 CTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTT 171155 | | || | ||| | || || | |||||| | || |||||||||||| |||| ||| Sbjct 21888521 ATCATATTTTTCCAAAGATTTCATACTTGGACATTAAACCCATTTCATATGCTGGGAGTT 21888580 Query 171156 G-CA-GGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATA 171213 | || |||| | || | |||| | || | || |||||||||| || ||||| | || Sbjct 21888581 GTCATTGTAT--TGGGTGTTGCACTACTATGCGCTATTCATGGTGCAACGGTAGAAAGTA 21888638 Query 171214 CTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTC-AGGAG 171272 |||| | ||||||||||||| | ||| || ||| || ||| || | || | | | Sbjct 21888639 CTTTATTTGAAGATGGTGATGGTGAAAATACATTTTGTGCTTTTAACCCAACCCAACCCG 21888698 Query 171273 GAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCG-C 171331 || | || ||||| ||| | |||| |||||| || ||||| || || ||||| | | Sbjct 21888699 AAAAAAACCTATTCAATGATTACTGTTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGTT 21888758 Query 171332 GTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTG 171391 ||| ||||||| |||||| ||||| |||||| ||||||| || || | || | || Sbjct 21888759 TTTCTCTAATAAGCATTGGTTACATTTATTTATGTTGTTTGTACCAGTAACTCGTTTATG 21888818 Query 171392 GGTCAGTAGTCTGGGGATTATTGG-TCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAA 171450 | ||| ||| ||||| |||| || | || | || || | |||||||||||||| Sbjct 21888819 AATGAGTGTTCTTGGGATAGTTGGTTCGTCCT-TGAACCTACGTGCTTATGATTTCGTTT 21888877 Query 171451 GTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCC 171510 ||| || || | ||| ||| || |||| || || || || || || Sbjct 21888878 CTCAAGAAATCTGTGCAATAGA----------TTTAAGACTTTATACACTAAAAATATTT 21888927 Query 171511 TATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTG 171570 | || || |||||| |||||||||||||| || | | | || | |||||||||||| Sbjct 21888928 TCTTAAACGAAGGTATTCGTGCATGGATGACAACTCAAAATCAGTCTCATGAAAACTTTA 21888987 Query 171571 TGTTCCCAGAGGAAGTTCTACCTCGTG 171597 | |||| || || |||||| | |||| Sbjct 21888988 TATTCCTTGAAGAGGTTCTATCACGTG 21889014 >seq2 Length=49040938 Score = 150 bits (166), Expect = 2e-31 Identities = 240/341 (70%), Gaps = 15/341 (4%) Strand=Plus/Plus Query 171274 AAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGT 171333 |||| || ||||| ||||| ||||||||| || ||||| || || ||||| | || | Sbjct 27893024 AAGAAACTTATTCAATGGTA--TGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTT 27893081 Query 171334 TCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGG 171393 | |||| | |||||||||||| | ||||| || || || ||| | ||| Sbjct 27893082 TTTCCAATTA----------CATTTCTTTATGTTATTTGTACCAGTAATTGGTTTATGGA 27893131 Query 171394 TCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTA-GGGCTTATGATTTCGTAAGT 171452 | ||| ||| |||| | ||| | | ||| | |||| | |||||||||||||| | Sbjct 27893132 TGAGTGCTCTTAGGATAGTCGGT-TAGGCCTTGACCTTACGTGCTTATGATTTCGTTTCT 27893190 Query 171453 C-AGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCT 171511 | || | | | ||||| |||||||| || || || | || || ||||| || || || Sbjct 27893191 CAAGAAATTTTGCGCAGCGGAAGATCCTGAATTTGATATTTTATACACCAAAAATATTCT 27893250 Query 171512 ATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGT 171571 || || |||||| |||||| ||||| ||| | ||| || | ||||||||| || | Sbjct 27893251 CTTAAACGAAGGTATTCGTGTGTGGATTGCAGCTCAAGATCAGCTTCATGAAAACCTTAT 27893310 Query 171572 GTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||||| ||||| |||||||| ||||| || || |||| || Sbjct 27893311 ATTCCCTGAGGAGGTTCTACCACGTGGTAACGCTCTTTAAT 27893351 >seq9 Length=37469608 Score = 141 bits (156), Expect = 1e-28 Identities = 327/486 (67%), Gaps = 5/486 (1%) Strand=Plus/Plus Query 169441 TTGT-TTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAAC 169499 |||| || || ||||| || |||| ||| || || ||||| | || || || | ||| | Sbjct 1917802 TTGTATTTATTATCGCTTTTATCGTTGCCCCTCCAGTGGATAATGATGGTATTCACGAGC 1917861 Query 169500 CCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTT 169559 | ||| ||| || || | ||||| ||||| ||||| |||||||| | | | ||| Sbjct 1917862 CTGTTTTTGGATCCCTACTTTATGGAAACAATATCATTTCTGGTGCGACTATTCATACTT 1917921 Query 169560 CCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGT 169619 || || | | | || || ||||| || ||||||| | | | |||||||| Sbjct 1917922 TTGCGGCTATAGATTTGCATTTTTATCCTATATGGGAAGTGACTTTTGTTGATGAATGCC 1917981 Query 169620 TGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCT-CATCG-GCATCTATGC 169677 | ||||||| ||||||| |||| |||| | || ||| | | | | | | || ||| Sbjct 1917982 TATACAACGACGGTCCTTATGAACTAATTGTTCTACATTTCTTACTTAGTGTAGCT-TGC 1918040 Query 169678 TTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGT 169737 | ||||||||||||| |||||| | || |||| ||||||||| | |||||| ||| Sbjct 1918041 T-ACATGGGTCGTGAATGGGAACTTAACTTTCGTTTGGGTATGCATCATTGGATTGCTGT 1918099 Query 169738 TGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCA 169797 ||| || || |||| | ||| || | | ||||||| || |||| || |||| || Sbjct 1918100 TGCATATTCAACTCCTGATGCAGCTGTTATTGTTGTTTTCTTGATCTATCCTATTGGTCA 1918159 Query 169798 AGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGT 169857 ||| || || || | |||||| | || || | || || || || | ||| | || Sbjct 1918160 AGGAAGCTTTTCGGATGGAATGCCTTTAGGAATTTATGGTACTTTCAATTTTATGATTGT 1918219 Query 169858 CTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGT 169917 || || |||||| || || || ||||| | || ||| || | |||| | || || Sbjct 1918220 ATTTCAGATTGAGCATAATATTCTTATGCATCAATTTCACGTGTTAAGTGTGACTGGTGT 1918279 Query 169918 GTTTGG 169923 ||||| Sbjct 1918280 ATTTGG 1918285 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 171523 GTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGG 171582 || ||||||||||||||||| | ||| || || ||||||||| || | ||||| |||| Sbjct 24301765 GTATTCGTGCATGGATGGCAGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 24301706 Query 171583 AAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 | |||||||| ||||| || || |||| || Sbjct 24301705 AGGTTCTACCACGTGGAAACGCTCTTTAAT 24301676 >seq7 Length=51758522 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 169679 TACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTT 169738 |||||||||||||| || ||| | | ||||||||||||||| |||||||| |||| Sbjct 47750129 TACATGGGTCGTGAATGAGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTT 47750188 Query 169739 GCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAA 169798 || || || ||||| ||||| || || | ||||||||| || |||| || |||| ||| Sbjct 47750189 GCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAA 47750248 Query 169799 GGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTC 169858 || || || || | ||||||| | || || || || || || || | ||| | || Sbjct 47750249 GGAAGCTTTTCGGATGGTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTA 47750308 Query 169859 TTCCAAGCTGAGCACAACATCCTCATGCACCCCTT 169893 || || |||||||| || || || ||||| || || Sbjct 47750309 TTTCAGGCTGAGCATAATATTCTTATGCATCCATT 47750343 >seq1 Length=52205531 Score = 123 bits (136), Expect = 3e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 171301 ATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCT 171360 |||| || ||||| || || ||||| | || || |||||| |||||||| ||||||| Sbjct 38350079 ATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCT 38350138 Query 171361 TTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTG 171420 ||||| | ||||| || || | ||| | ||| | ||| ||| ||| | | ||| | | Sbjct 38350139 TTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTTTGG 38350198 Query 171421 CTCTTAATCTTA-GGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCA 171479 | || || |||| | |||||||||||||| ||| || || | ||||| |||||||| Sbjct 38350199 CCCTGAA-CTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCT 38350257 Query 171480 GAGTTCGAGACGTTCTATACCAAGAACATCCTATT 171514 || || ||||| ||||| ||||| || || || || Sbjct 38350258 GAATTTGAGACTTTCTACACCAAAAATATTCTCTT 38350292 >seq8 Length=59662532 Score = 120 bits (132), Expect = 4e-22 Identities = 188/267 (70%), Gaps = 13/267 (5%) Strand=Plus/Minus Query 171277 AGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCA 171336 ||| | | || ||||| ||||||||||| || ||||| || || ||||| | || || Sbjct 1232879 AGAGAGACTCAATGGTTACTGCTAATCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTT- 1232821 Query 171337 GCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCA 171396 | |||||| |||||||||||| | ||||| || || | ||| | || | | Sbjct 1232820 --------CATTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGAATGA 1232769 Query 171397 GTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGG-GCTTATGATTTCGTAAGTCAG 171455 || ||| ||| | | ||| | || | || |||| | |||||||||||||| ||| Sbjct 1232768 GTGCTCTTGGGGTGGTCGGTTTGGCCGTGAA-CTTATGTGCTTATGATTTCGTTTCTCAA 1232710 Query 171456 GAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTG 171515 || || | ||||| ||| |||| || || ||||| ||| | | ||| || || || || Sbjct 1232709 GAAATCCGCGCAGCGGAATATCCTGAATTTGAGACTTTCAACAACAAAAATATTCTCTTA 1232650 Query 171516 AATGAAGGTCTTCGTGCATGGATGGCA 171542 || ||||| ||||||| ||||||||| Sbjct 1232649 AA--AAGGTATTCGTGCGTGGATGGCA 1232625 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 170199 GTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAG 170258 |||| || |||||||| ||| | | ||| |||| |||||||| | || |||||||| | Sbjct 31293220 GTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATAAATACCTGGGCTG 31293279 Query 170259 ACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACT 170318 | || | ||||| ||| ||||| |||||||| ||||| || ||||||||||| || | Sbjct 31293280 ATATTATTAACCGAGCTAACCTTGGTATGGAAGTCATGCATGAACGTAATGCTCATAATT 31293339 Query 170319 TCCCTCTCGACCTCGCTGC 170337 ||||||| || || ||||| Sbjct 31293340 TCCCTCTAGATCTAGCTGC 31293358 >seq4 Length=45960019 Score = 107 bits (118), Expect = 2e-18 Identities = 143/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 171420 GCTCTTAATCTTAGG-GCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCC 171478 |||| | | |||| | |||||||||||||| ||| || || | ||| | ||||| | Sbjct 43482219 GCTCCTGAACTTACGTGCTTATGATTTCGTTTCTCAAGAAATCCGTGCATGA-AAGATTC 43482277 Query 171479 AGAGTTCGAGACGTTCTATAC-CAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGA 171537 || || || || || || || || || || || || || |||||| ||||||| |||| Sbjct 43482278 TGAATTTGATACTTTGTACACAAAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGA 43482337 Query 171538 TGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTG 171597 ||||| ||| || || ||||||||| || | ||||| ||||| |||||||| |||| Sbjct 43482338 TGGCAATTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTG 43482397 Query 171598 GCAATGCACTTTGAT 171612 | || || |||| || Sbjct 43482398 GAAACGCTCTTTAAT 43482412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592193159044160