Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq4660 279 2e-70 >seq4660 Length=5865 Score = 279 bits (308), Expect = 2e-70 Identities = 169/181 (93%), Gaps = 12/181 (7%) Strand=Plus/Minus Query 11552 CATCTGGAATCTGCGCAAGGATGATTATTTTGTTAACGATGAAGCGCGGGCGCGTTACTG 11611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CATCTGGAATCTGCGCAAGGATGATTATTTTGTTAACGATGAAGCGCGGGCGCGTTACTG 122 Query 11612 GGATGATCGTGAAAAGGCCCGTCTTGCGCTTGAAG------------CCGCCCGAAAGAA 11659 ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 121 GGATGATCGTGAAAAGGCCCGTCTTGCGCTTGAAGCCGCGCTTGAAGCCGCCCGAAAGAA 62 Query 11660 GGCTGAGCAGCAGACTCAACAGGACAAAAATGCGCAGCAGCAGAGCGATACCGAAGCGTC 11719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGCTGAGCAGCAGACTCAACAGGACAAAAATGCGCAGCAGCAGAGCGATACCGAAGCGTC 2 Query 11720 A 11720 | Sbjct 1 A 1 Score = 131 bits (144), Expect = 5e-26 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 7948 GTTAACCGTCGCCGCTGAAAGGGGGATGTATGGCCATAAAAGGTCTTGAGCAGGCCGTTG 8007 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 5865 GTTAACCGTCGCCGCTGAAAGGGGGATGTATGGCCATAAAAGGTCTTGAGCAGGCCTTTG 5806 Query 8008 AAAACCTCAGCCGTATC 8024 |||||||| |||||||| Sbjct 5805 AAAACCTCCGCCGTATC 5789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155067092708320