Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq435 223 4e-53 seq549 149 7e-31 seq14 113 5e-20 seq23 104 3e-17 seq131 87.8 2e-12 >seq435 Length=220439 Score = 223 bits (246), Expect = 4e-53 Identities = 416/606 (69%), Gaps = 4/606 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||| || || || || || |||| || || ||||| || || || || Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || |||||||| ||||| ||||| ||||||||||| | | |||| | || || || || Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 104747 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 || ||||| || ||||| || || | || || || ||| ||| | | ||| Sbjct 104748 TATCCCTTCCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTCTAT 104807 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 |||| | |||||| || |||||||| ||||| |||| ||||| || |||| ||| Sbjct 104808 CCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAA 104867 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 ||| ||| || ||| || ||| || | || || || | ||||||||| ||||| || Sbjct 104868 CAGACGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTC 104927 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 24493 ||| || || || ||||| || || || || ||||||||| | ||||| | | || Sbjct 104928 CGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTG 104987 Query 24494 TACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 |||||| | || || | || | ||| || || ||||| ||| ||| || || Sbjct 104988 GACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGAA 105047 Query 24554 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 24613 || || | || || || || | ||| ||||| || || || || | ||| | | Sbjct 105048 GAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACG 105107 Query 24614 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 || |||| ||| | ||| || ||||| | |||||||| || || || ||||| || || Sbjct 105108 GAGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTTGTA 105167 Query 24674 CATATTCCAGATGTCAT-GATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTG 24732 ||| | |||||| | || ||||||||||||| || ||| |||| | ||| |||| | Sbjct 105168 CATCTCCCAGAT-TGATGGATATTGAATTGGGAACATACAGAATCGGTCTGGGTTTTCAG 105226 Query 24733 CAAGGA 24738 | |||| Sbjct 105227 CGAGGA 105232 >seq549 Length=172529 Score = 149 bits (164), Expect = 7e-31 Identities = 404/613 (66%), Gaps = 4/613 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||| || || || || || |||| || || ||||| ||||| || || Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||| | ||||||||||| | ||||||||| | | |||| | || || || || Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 30723 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 || ||||| || ||||| |||| || ||||| | ||| |||| | | || Sbjct 30722 TATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACTCTCGCTCCCGTCAAT 30663 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 |||| ||||| |||||||| || || |||| || || ||||||| ||| Sbjct 30662 CCACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAA 30603 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 || || || || | | ||| || | ||| || || | || |||||| ||||| || Sbjct 30602 CAGGCGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTC 30543 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 24493 || || || || ||||| || || || |||||||| ||| | ||||| | | || Sbjct 30542 GGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTG 30483 Query 24494 TACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 || ||| | || || | || | |||||| || || || ||| ||| || || Sbjct 30482 GACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAA 30423 Query 24554 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 24613 || || | ||||| || || | || ||||| || || || || | ||| | Sbjct 30422 GAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCG 30363 Query 24614 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 |||||| || | ||| || || || | |||||||| || ||||| || || || || Sbjct 30362 GATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTA 30303 Query 24674 CATATTCCAGATGTCAT-GATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTG 24732 ||| | |||||| | || | || ||||| || || ||| || | | ||| |||| | Sbjct 30302 CATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATACAGAACCGGTCTGGGTTTTCAG 30244 Query 24733 CAAGGATTGGTTC 24745 | |||| ||||| Sbjct 30243 CCAGGAGGGGTTC 30231 >seq14 Length=2767599 Score = 113 bits (124), Expect = 5e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | ||| |||||||| || || |||||| | ||| | | || | Sbjct 700777 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCAAATGG 700836 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 ||||| | ||||||||| || ||||| || |||||||| || || || | ||| | | Sbjct 700837 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 700896 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||||||||| ||||| || | ||| | | ||||| | ||||||| |||| | Sbjct 700897 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAGGATCTTTCAAGC 700956 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 || || || ||||| || | || |||||| || || || || || | |||| Sbjct 700957 GTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 701011 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | || || | ||| | || ||||||||||||| || || Sbjct 700398 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCC 700457 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| ||||| ||||| |||||| ||||||| || || || Sbjct 700458 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 700517 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 || ||| || || ||||| |||| ||| | || || || || |||||||| || Sbjct 700518 TACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATAT 700577 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 || || ||||||||||| ||||| Sbjct 700578 TCCTTCAATACTATCATCTTTCATG 700602 >seq23 Length=2045696 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | ||| |||||||| || || |||||| | ||| | | || | Sbjct 906309 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGTGTGAACCATCGCTGAGACATCAAATGG 906250 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || | || || | || ||||| || |||||||| || || || | ||||| | Sbjct 906249 TATGTTTTGAGTGCCAAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATTAGC 906190 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||||||||| ||||| || | ||| | | ||||||| ||||||| |||| | Sbjct 906189 ATGTGCTGAGGCCTTTCCACAACCTTCCCTTGGACCTTCAGCAGGTAGGATCTTTCAAGG 906130 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 || || || ||||| || | ||| |||||| || || || || || | |||| Sbjct 906129 GTCTTGAAGCCAAAGTAATCGTAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 906075 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 906677 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 906618 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| || || ||||| |||||| ||||||| || || || || Sbjct 906617 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 906558 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 || ||| || || || || |||| ||| | || || || || |||||||| || Sbjct 906557 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 906498 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 || || ||||||||||| ||||| Sbjct 906497 TCCTTCAATACTATCATCTTTCATG 906473 >seq131 Length=684295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 |||||||| || | ||||||| | |||||| || | ||||||| ||| |||| || Sbjct 385980 TCTCTTTCATACTGGGTATACAGTTTTTCAAATTCTTGTCCCCAACAATTAGCCAAACCT 385921 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC-CTTC--ACTCGTTTCATA 54040 ||| ||| || || | ||| ||||| | |||||| | || |||| || ||| Sbjct 385920 GGAGCCTCACTAGGGCAAAACAAAGACCATTT---GTCATCACCTCGAACTCTTTCCATG 385864 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 ||||||||||||||||||||||| | |||| |||| | || |||||| || Sbjct 385863 AAGAGATCAGGAATCCAAAGAGCAAGGAATAAGTCTCGAGCTCGATGTTCTTC 385811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593650242085200