Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq26 104 2e-17 seq461 91.5 1e-13 seq78 91.5 1e-13 seq311 82.4 7e-11 seq200 82.4 7e-11 >seq26 Length=1968749 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || ||||| || || || |||||| || || | | Sbjct 78697 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACTATTACCTTGGAGGTAGAGAGCTCT 78756 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || ||||| || | ||| ||||||| Sbjct 78757 GACACCATCGATAATGTCAAGGCAAAAATCCAGGACAAAGAGGGCATCCCCCCAGATCAA 78816 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| ||||| || ||||| ||| ||| | || || ||||| Sbjct 78817 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCACTCTTGCTGACTACAAC 78876 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| |||||||||||| ||||| | || || || ||||| Sbjct 78877 ATTCAGAAGGAGTCTACTCTTCACTTGGTGCTGCGCTTGCGTGGAGG 78923 >seq461 Length=207379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAA-CGGAACCCGC 29020 ||||| |||||| |||| || ||||| || || |||||||| ||| || || | || Sbjct 160183 ATGCAGATATTCGTCAAGACCTTGACCGGGAAGACCATTACTCTCGAGGTCGAAAGCAGC 160242 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | ||||| ||||||| || || ||||| | || |||||| Sbjct 160243 -GACACCATCGACAACGTTAAGGCAAAAATTCAAGACAAGGAAGGGATCCCACCAGATCA 160301 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | ||||| || || |||||||| || ||| ||| | || ||||| || Sbjct 160302 ACAACGTTTGATCTTCGCTGGGAAACAACTTGAGGATGGTCGGACTCTAGCTGATTATAA 160361 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||||||||| || || ||||| Sbjct 160362 TATTCAGAAGGAGTCGACCCTTCA 160385 >seq78 Length=1009284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 28954 GTGTAAAA-ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACG 29012 |||||| | ||||| || || | || || | || ||||| || |||||| || | Sbjct 201352 GTGTAACAGATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTG 201293 Query 29013 GAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCC 29072 ||| | | || || | | | || | ||| || ||| || || ||||| | || Sbjct 201292 GAAAGCTCTGACACAATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGGGATCCCA 201233 Query 29073 GTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCC 29132 ||||| ||||| ||||||||||| |||||||| || |||||| | || | || Sbjct 201232 CCGGATCAGCAAAGGCTTATCTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCT 201173 Query 29133 GATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || || ||||||||||||||||||||||| || ||||| | || | || || ||| Sbjct 201172 GACTATAATATTCAGAAGGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGGG 201116 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 28954 GTGTAAAA-ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACG 29012 |||||| | ||||| || || | || || | || ||||| || |||||| || | Sbjct 220956 GTGTAACAGATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTG 220897 Query 29013 GAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCC 29072 ||| | | || || | | | || | ||| || ||| || || ||||| | || Sbjct 220896 GAAAGCTCTGACACAATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGGGATCCCA 220837 Query 29073 GTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCC 29132 ||||| ||||| ||||| ||||| |||||||| || |||||| | || | || Sbjct 220836 CCGGATCAGCAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCT 220777 Query 29133 GATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || || ||||||||||||||||||||||| || ||||| | || | || || ||| Sbjct 220776 GACTATAATATTCAGAAGGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGGG 220720 >seq311 Length=316158 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || || || ||||||| || || || || |||||| | || | || || Sbjct 207308 AGATCAGCAGAGGCTAATCTTTGTAGGGAAGCAGCTAGAAGATGGAAGGACCCTTGCTGA 207249 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||| |||||||| ||||| ||||||||||| ||||| | || ||| |||||||| Sbjct 207248 TTATAATATTCAAAAGGAGTCTACTCTTCATCTGGTGCTGCGTTTAAGAGGAGGG 207194 >seq200 Length=492930 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| |||||||| || ||||| ||| ||| ||| | || Sbjct 457470 ATGCAGATCTTCGTGAAAACCTTGACGGGGAAGACCATAACCCTCGAGGTAGAATCTTCA 457411 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || ||||| || || ||||| | || ||| || Sbjct 457410 GATACAATCGACAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCACCAGACCAG 457351 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | ||||| || || || |||||||| |||||| || | || || ||||| Sbjct 457350 CAACGTCTTATTTTCGCCGGGAAACAACTAGAAGATGGACGTACACTTGCAGACTACAAC 457291 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 |||||||||||||| || || ||| ||||| | || || Sbjct 457290 ATTCAGAAGGAATCCACACTCCACTTGGTGCTTCGCTT 457253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428285806382825