Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq26 98.7 8e-16 seq461 82.4 6e-11 seq311 82.4 6e-11 seq78 82.4 6e-11 >seq26 Length=1968749 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || ||||| || || || |||||| || || | | Sbjct 78697 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACTATTACCTTGGAGGTAGAGAGCTCT 78756 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| |||||| || ||||| || | ||| ||||||| Sbjct 78757 GACACCATCGATAATGTCAAGGCAAAAATCCAGGACAAAGAGGGCATCCCCCCAGATCAA 78816 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| ||||| || |||| ||| ||| | || || ||||| Sbjct 78817 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCACTCTTGCTGACTACAAC 78876 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| |||||||||||| ||||| | || || || ||||| Sbjct 78877 ATTCAGAAGGAGTCTACTCTTCACTTGGTGCTGCGCTTGCGTGGAGG 78923 >seq461 Length=207379 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||| || || ||| | |||||||| || || || |||||||| || ||| |||| || Sbjct 160524 AGACCAGCAGAGATTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCAGGACTCTGGCGGA 160583 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||| |||||||||||||| || |||||||| | ||| || | | || |||||| Sbjct 160584 TTATAATATTCAAAAGGAGTCAACTCTTCATCTTGTGCTAAGGCTGCGCGGAGGG 160638 >seq311 Length=316158 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| || || || ||||||| || || || | |||||| | || | || || Sbjct 207308 AGATCAGCAGAGGCTAATCTTTGTAGGGAAGCAGCTAGAAGATGGAAGGACCCTTGCTGA 207249 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||| |||||||||||||| ||||||||||| ||||| | || ||| |||||||| Sbjct 207248 TTATAATATTCAAAAGGAGTCTACTCTTCATCTGGTGCTGCGTTTAAGAGGAGGG 207194 >seq78 Length=1009284 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 25027 GTGTAAAA-ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACG 25085 |||||| | ||||| || || | || || | || ||||| || |||||| || | Sbjct 201352 GTGTAACAGATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTG 201293 Query 25086 GAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCC 25145 ||| | | || || | | | || | ||| || ||| || || ||||| | || Sbjct 201292 GAAAGCTCTGACACAATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGGGATCCCA 201233 Query 25146 GTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCC 25205 ||||| ||||| ||||||||||| |||||||| | |||||| | || | || Sbjct 201232 CCGGATCAGCAAAGGCTTATCTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCT 201173 Query 25206 GATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || || |||||||| |||||||||||||| || ||||| | || | || || ||| Sbjct 201172 GACTATAATATTCAGAAGGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGGG 201116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410748661675610