Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq78 127 3e-24 seq189 125 1e-23 seq1471 123 4e-23 seq311 123 4e-23 seq461 104 4e-17 seq663 89.7 8e-13 seq70 89.7 8e-13 seq25 89.7 8e-13 >seq78 Length=1009284 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| ||||| || | ||| | ||| | Sbjct 220947 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCT 220888 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || || ||||| || || ||||| || ||||| ||||| Sbjct 220887 GACACAATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGGGATCCCACCGGATCAG 220828 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||| || ||||| | || ||| | | || | | || |||||| Sbjct 220827 CAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCTGACTATAAT 220768 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| ||| |||||||||| | ||| | || ||||| || Sbjct 220767 ATTCAGAAGGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGGGAT 220718 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| ||||| || | ||| | ||| | Sbjct 201343 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCT 201284 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | || || ||||| || || ||||| || ||||| ||||| Sbjct 201283 GACACAATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGGGATCCCACCGGATCAG 201224 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||| || ||||| | || ||| | | || | | || |||||| Sbjct 201223 CAAAGGCTTATCTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCTGACTATAAT 201164 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| ||| |||||||||| | ||| | || ||||| || Sbjct 201163 ATTCAGAAGGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGGGAT 201114 >seq189 Length=529659 Score = 125 bits (138), Expect = 1e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || ||||| |||||||| |||||| | || | || Sbjct 461303 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCC 461362 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || |||| || |||||||| ||||||||||| || || |||||| Sbjct 461363 GATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAA 461422 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| || ||||||||||||||| || | || | | ||||||||| Sbjct 461423 CAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATAAT 461482 Query 124719 ATTCAAAAAGAATCAAC 124735 || ||||| || || || Sbjct 461483 ATCCAAAAGGATTCCAC 461499 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || ||||| || || || ||| | || |||| ||| Sbjct 461759 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAGACCATCACTCTTGAAGTTGAGAGCTC- 461817 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || || | ||| || || || ||||| |||||||| ||||| || || Sbjct 461818 TGATACGATAGACAACGTGAAAGCCAAGATACAGGATAAGGAAGGTATTCCACCGGACCA 461877 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| || || |||||||||||| | | || | | ||||| || Sbjct 461878 GCAGAGGCTTATCTTTGCTGGGAAGCAATTAGAGGATGGGAGGACTCTTGCGGATTACAA 461937 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||| || || || ||| | ||| | || | ||| | ||||||||| Sbjct 461938 TATTCAGAAGGAGTCTACTCTCCATCTCGTGCTCCGTCTTCGAGGTGGT 461986 Score = 104 bits (114), Expect = 4e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || ||||||||||| |||||| | || | || | Sbjct 461075 ATGCAGATCTTCGTGAAAACCCTGACAGGCAAAACCATAACTCTTGAAGTCGAGAGTTCT 461134 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| || | ||| ||||| ||||| ||||||||||| || |||||||| Sbjct 461135 GATACAATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCTCCTGATCAG 461194 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| || || |||||| | ||||| | || || | | |||||||| Sbjct 461195 CAACGCCTGATTTTCGCTGGCAAACAACTCGAGGACGGCCGTACCCTTGCCGATTATAAC 461254 Query 124719 ATTCAAAAAGAATCAAC 124735 || ||||| ||||| || Sbjct 461255 ATCCAAAAGGAATCCAC 461271 >seq1471 Length=47346 Score = 123 bits (136), Expect = 4e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| |||||||| || || || || | ||| | || ||| Sbjct 5607 ATGCAAATATTTGTCAAGACCCTAACAGGAAAGACAATTACCCTTGAGGTCGAGAGCTC- 5549 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| || || ||| || ||||||||||| |||||||| ||||||||||| Sbjct 5548 TGATACAATAGACAACTTGAAAACCAAGATTCAAGATAAGGAAGGTATTCCACCTGATCA 5489 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| |||| ||||| || | ||||| |||||| | | ||| || |||||||| Sbjct 5488 GCAGAGGTTTATCTTTGCTGGGGAGCAATTGGAGGATGGGAGCTCAT--GAGGATTATAA 5431 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 | |||| || || || | | | ||| | || | ||| || |||||| Sbjct 5430 TGTTCAGAAGGAGTCTATTGTCCATCTCGTGCTCCGTCCTCGTGGTGGT 5382 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| || || ||||| || | || ||||| || ||||| || |||| ||| || Sbjct 5751 AAGATTCAGGAGAAGGAAGGAATCCATCCAGATCAGCAGAGGCTAATCTTTGTAGGGAAG 5692 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || |||| ||| | | || | | ||||||||||||||||| || || ||| | ||| Sbjct 5691 CAGCTAGACGATGGAAGGACCCTTGCTGATTATAATATTCAAAAGGACTCTACTCTTCAT 5632 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| | |||||| |||| || || Sbjct 5631 CTGGTGCTGCGTTTAAGAGGAGGGAT 5606 >seq311 Length=316158 Score = 123 bits (136), Expect = 4e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| |||||||| || || || || | ||| | || ||| Sbjct 207193 ATGCAAATATTTGTCAAGACCCTAACAGGAAAGACAATTACCCTTGAGGTCGAGAGCTC- 207135 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| || || ||| || ||||||||||| |||||||| ||||||||||| Sbjct 207134 TGATACAATAGACAACTTGAAAACCAAGATTCAAGATAAGGAAGGTATTCCACCTGATCA 207075 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| |||| ||||| || || ||||| |||||| | | ||| || ||||||| Sbjct 207074 GCAGAGGTTTATCTTTGCTGGGAAGCAATTGGAGGATGGGAGCTCAT--GAGGATTATAG 207017 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 | |||| || || || ||| ||| | || | ||| || |||||| Sbjct 207016 TGTTCAGAAGGAGTCTGTTTTCCATCTCGTGCTCCGTCCTCGTGGTGGT 206968 >seq461 Length=207379 Score = 104 bits (114), Expect = 4e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || || || || ||| | ||| | || | | Sbjct 160639 ATGCAGATTTTTGTGAAGACATTGACGGGGAAGACCATTACTCTGGAGGTGGAGAGTAGT 160698 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||| ||||| || || || || || ||||| || || Sbjct 160699 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAG 160758 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| |||||||| || || || || |||||| | | || || | ||||||||| Sbjct 160759 CAAAGGCTGATTTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACTTTGGCTGATTATAAT 160818 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || ||||| || ||| | || | || ||||| | || ||||| Sbjct 160819 ATCCAGAAAGAGTCTACTCTTCACCTTGTCTTACGCCTTCGCGGTGG 160865 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | ||||| | || || || || || ||| | ||| | ||| | Sbjct 160183 ATGCAGATATTCGTCAAGACCTTGACCGGGAAGACCATTACTCTCGAGGTCGAAAGCAGC 160242 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || |||| || ||||||||||| || ||||| || ||||| ||||| Sbjct 160243 GACACCATCGACAACGTTAAGGCA-AAAATTCAAGACAAGGAAGGGATCCCACCAGATCA 160301 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || |||||| | |||||| |||| || ||| |||||||| Sbjct 160302 ACAACGTTTGATCTTCGCTGGGAAACAACTTGAGGATGGTCGGACTCTAGCTGATTATAA 160361 Query 124718 TATTCAAAAAGAATCAAC 124735 |||||| || || || || Sbjct 160362 TATTCAGAAGGAGTCGAC 160379 >seq663 Length=136023 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| | ||||| ||||| || ||| ||||| | || |||| Sbjct 60195 ATGCAGATATTTGTGAAGACCTTGACAGGGAAAACCATTACTCTAGAGGTAGAGAGCAGC 60136 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || | || || |||||||| || || || || ||||||||||| Sbjct 60135 -GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGCATCCCACCTGATCA 60077 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||||||||| || | || ||| | || || | | || || || Sbjct 60076 ACAACGTTTGATCTTTGCAGGAAAGCAGCTCGAAGATGGCCGGACTCTGGCTGACTACAA 60017 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || ||||| || || | || | || | ||| | ||||| ||||| Sbjct 60016 TATCCAGAAAGAGTCTACCCTTCACCTTGTCCTCCGTCTCCGAGGGGGTAT 59966 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| || || || || || || ||||| |||||||| | || || ||||| ||||| Sbjct 59883 AAAATCCAGGACAAGGAGGGCATCCCACCGGATCAACAGCGTCTGATCTTTGCCGGAAAG 59824 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || |||||| | |||| || | ||||||||||| || ||||| || || | || Sbjct 59823 CAGTTGGAGGATGGAAGAACCTTGGCGGATTATAATATCCAGAAAGAGTCTACCCTTCAC 59764 Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766 | || || ||| | || |||||| Sbjct 59763 CTTGTCTTGCGTCTCCGTGGTGGT 59740 >seq70 Length=1087276 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| | || || || || || || | ||| | || ||| Sbjct 269060 ATGCAAATTTTTGTGAAGACTTTGACTGGGAAGACCATCACCTTGGAGGTGGAGAGCTCC 269119 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || ||||| ||||||||||| || || || || || || Sbjct 269120 -GACACCATTGATAATGTCAAGGCTAAAATCCAAGATAAAGAGGGCATCCCTCCAGACCA 269178 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| || ||||| || || ||| | |||||| | || || | | ||||| || Sbjct 269179 ACAGAGGCTCATCTTTGCTGGCAAGCAACTCGAGGATGGGCGCACTCTCGCTGATTACAA 269238 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | || | || |||||||| Sbjct 269239 CATCCAGAAGGAGTCCACCCTTCATTTGGTGCTTCGCCTCCGTGGTGGTAT 269289 >seq25 Length=1969896 Score = 89.7 bits (98), Expect = 8e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || || ||||| || || |||||||| ||||| | |||||||| || ||||||| Sbjct 1926782 TTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAAAGATTGATTTTTGCTGGTAAACAAT 1926723 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 |||| ||| | ||||| | | ||||| ||||| || || || || || | || |||| Sbjct 1926722 TAGAAGATGGGCGAACTCTTGCTGATTACAATATCCAGAAGGAGTCGACGCTTCACTTGG 1926663 Query 124747 TTTT 124750 |||| Sbjct 1926662 TTTT 1926659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755365203632000