Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq25 113 7e-20 seq189 107 3e-18 seq138 104 3e-17 seq78 102 1e-16 seq14 95.1 2e-14 seq461 86.0 9e-12 >seq25 Length=1969896 Score = 113 bits (124), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || ||||| || | || || || || ||||| ||||| Sbjct 1926641 GTTCCTCCCCTGAGCCTCAAAACCAAGTGAAGCGTCGACTCCTTCTGGATATTGTAATCA 1926700 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| ||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1926701 GCAAGAGTTCGCCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGCTGATCAGGA 1926760 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| || || || Sbjct 1926761 GGGATGCCTTCCTTGTCCTG 1926780 >seq189 Length=529659 Score = 107 bits (118), Expect = 3e-18 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| | ||| || || | ||| ||||||||||| ||||||||||| | || Sbjct 461484 ATATTATAATCCGCAAGGGTCCTACCATCCTCTAATTGTTTCCCAGCAAAAATTAGCCTC 461425 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 || ||||||||||| || |||||||| ||||| |||| Sbjct 461424 TGTTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGCCTTTACGTTGTCAATAGTA 461365 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || ||||| || ||||| || || || ||||| || |||| ||||| | ||| |||||| Sbjct 461364 TCGGAACTCTCGACTTCAAGAGTTATGGTTTTGCCGGTTAGGGTTTTGACGAAGATTTGC 461305 Query 146276 AT 146277 || Sbjct 461304 AT 461303 >seq138 Length=649818 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || |||| || | ||| || || || || || ||||| Sbjct 591358 GTTCCTCCCCTAAGCCTCAAAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCA 591417 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | | ||| ||||||||||| || ||||||||||||||||||||||| ||| Sbjct 591418 GCAAGAGTACGTCCATCCTCTAATTGTTTACCGGCAAAAATCAATCTTTGCTGATCAGGA 591477 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| || || || Sbjct 591478 GGGATGCCTTCCTTGTCCTG 591497 >seq78 Length=1009284 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| ||||| || ||||| || |||| ||| || | | ||| || Sbjct 200679 ACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAGTCTGCAAGGGTGCGACCATCCTCC 200738 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 200739 AGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGAATCCCTTCCTTATCTTG 200797 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| ||||| || ||||| || |||| ||| || | | ||| || Sbjct 220283 ACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAGTCTGCAAGGGTGCGACCATCCTCC 220342 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 220343 AGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGAATCCCTTCCTTATCTTG 220401 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||||||||| || |||||||| || | ||| || || | ||| || Sbjct 220739 ACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGTCAGCAAGGGTCCTTCCATCTTCA 220798 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||| ||||||||||| | |||||||||||||| || || ||||| || || || Sbjct 220799 AGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGATCCGGTGGGATCCCTTCCTTGTCCTG 220857 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||||||||| || |||||||| || | ||| || || | ||| || Sbjct 201135 ACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGTCAGCAAGGGTCCTTCCATCTTCA 201194 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||| |||||||| || | |||||||||||||| || || ||||| || || || Sbjct 201195 AGCTGTTTGCCAGCAAAGATAAGCCTTTGCTGATCCGGTGGGATCCCTTCCTTGTCCTG 201253 >seq14 Length=2767599 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || || || ||||| || | || || || || || |||||||| Sbjct 1620892 GTTCCTCCTCTCAGCCTCAAAACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCA 1620951 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| || | || ||| || ||||| || |||||||||||||| || ||||| || ||| Sbjct 1620952 GCAAGTGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGA 1621011 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 1621012 GGGATGCCTTCCTTATCCTG 1621031 >seq461 Length=207379 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||| || | || | |||||| ||||| ||||||||||| | Sbjct 160865 CCACCGCGAAGGCGTAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATCAGCC 160806 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| || | ||| || || || || ||||||||||||| |||||||| ||||| ||| Sbjct 160805 AAAGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAAATCAGCCTTTGCTGGTCCGGTGGA 160746 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || || || Sbjct 160745 ATGCCCTCCTTGTCCTG 160729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743437037420800