Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq41 98.7 6e-16 seq189 96.9 2e-15 seq185 96.9 2e-15 seq93 91.5 1e-13 seq137 87.8 1e-12 seq461 86.0 4e-12 seq273 86.0 4e-12 seq200 84.2 1e-11 >seq41 Length=1573182 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||| ||| | || || ||||| ||||| ||||| | Sbjct 840201 CCACCGCGTAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCA 840260 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || | || ||||||||| ||| Sbjct 840261 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 840320 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | ||| | || || Sbjct 840321 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTCTCAACC 840380 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || ||||| || ||||||||||||||||| Sbjct 840381 TCCAAAGTGATGGTCTTTCCAGTGAGTGTCTTCACAAAGATCTGCAT 840427 >seq189 Length=529659 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| |||||||| || ||||| | || ||| || || ||||| || |||| Sbjct 461301 CCGCCGCGAAGCCTCAGAACAAGGTGGAGGGTGGATTCCTTTTGGATGTTATAATCGGCA 461242 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGG 34280 || |||| |||| || | || ||||| |||||||| || || ||||| || || || Sbjct 461241 AGGGTACGGCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGGCGTTGCTGATCAGGAGGG 461182 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG 34339 || ||| ||||| || ||| ||||| | | | | || | ||| | ||| Sbjct 461181 ATACCTTCT--TTGTCTTGGAT-TTTGGCTTTGACGTTGTCGATTGTATCAGAACTCTCG 461125 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | || ||||||||||| || || |||||||| ||||||||||| Sbjct 461124 ACTTCAAGAGTTATGGTTTTGCCTGTCAGGGTTTTCACGAAGATCTGCAT 461075 >seq185 Length=543210 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| || ||||| ||||||||||| | || |||| | || Sbjct 498430 AGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCATCC 498371 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| || |||||||||| ||||||||| || | | ||||||||| Sbjct 498370 TCAAGTTGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC 498311 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| || | || | || | ||| || || | |||||||| Sbjct 498310 TGGATCTTGGCCTTTACATTATCAATAGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTC 498251 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| |||||||| || || ||||| |||||| Sbjct 498250 TTGCCAGTGAGAGTCTTGACGAAGATTTGCATC 498218 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| ||| ||||| ||||||||||| | || || | || Sbjct 498658 AGCACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGACCATCC 498599 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || |||| ||||||||| ||| | || ||||||||| Sbjct 498598 TCAAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 498539 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | || || |||| ||||| || Sbjct 498538 TGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATTGTC 498479 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || |||||||||||||| Sbjct 498478 TTGCCAGTAAGGGTCTTAACAAAGATCTGCAT 498447 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | |||||||| ||| | || || ||||| ||||||||||| | Sbjct 499130 TCCTCCACGGAGACGCAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGC 499071 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | || || | |||||| || || ||||| | || ||||||||| ||| Sbjct 499070 AAGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 499011 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| ||||| ||||| | || | | || | ||| | || | Sbjct 499010 GATGCCTTCCTTGTCTTGGATCTTG-GCTTTCACATTGTCAATAGTATCAGAGCTCTCCA 498952 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| || || ||||| || ||||||||||||||||| Sbjct 498951 CCTCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTCACAAAGATCTGCAT 498903 >seq93 Length=881566 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| ||||||||||| || || |||| | || Sbjct 480788 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCATCC 480847 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||||||||| ||||| ||||| || | | |||||||| Sbjct 480848 TCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTGTCT 480907 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | || | || || || || | || || || Sbjct 480908 TGAATC-TTGGCTTTGACATTGTCGATAGTGTCTGAGGACTCAACCTCGAGGGTTATTGT 480966 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || | |||||||| |||||||||||| Sbjct 480967 CTTGCCCGTCAAGGTTTTCACGAAGATCTGCATC 481000 >seq137 Length=652956 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| || ||||| || | || |||| | || |||| |||||| || || || || Sbjct 513287 TTCTGGATATTGTAATCAGCAAGGGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATC 513228 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGC 34320 || | |||||| || || | | |||||||| || ||| ||||| | || | | Sbjct 513227 AGTCTCTGCTGATCAGGAGGAATCCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTGTC 513169 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || | ||| | |||||||| || | || ||||| ||||| || || ||||||||||| Sbjct 513168 AATAGTATCACTAGATTCGACCTCAAGAGTTATGGTCTTGCCAGTCAGGGTTTTCACAAA 513109 Query 34381 GATCTGCATC 34390 |||||||||| Sbjct 513108 GATCTGCATC 513099 >seq461 Length=207379 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 34193 GTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCT 34252 || || || ||||| || ||||| |||| || ||| | || |||| ||| || || Sbjct 160151 GTGCTCTCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCCAGCTGTTTTCCG 160092 Query 34253 GCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT 34312 ||||| || || ||||| || || || | || |||||||| ||||| ||| Sbjct 160091 GCGAAGATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTG 160032 Query 34313 AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTT 34372 | | | | || | ||| | || || |||| |||||||| ||||||||||| ||| Sbjct 160031 ACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTT 159972 Query 34373 TTCACAAAGATCTGCAT 34389 ||||| ||||||||||| Sbjct 159971 TTCACGAAGATCTGCAT 159955 >seq273 Length=351239 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| ||||||||||| | ||| ||| | || Sbjct 177532 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCATCC 177591 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||||||||| ||||| ||||| || | | |||||||| Sbjct 177592 TCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCTGGTGGGATACCTTCCTTGTCT 177651 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | |||| || | || || || || | || || || Sbjct 177652 TGAATC-TTGGCTTTGACATTGTCGATCGTGTCTGAGGACTCAACCTCGAGGGTTATTGT 177710 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | |||||||| |||||||||||| Sbjct 177711 CTTACCCGTCAAGGTTTTCACGAAGATCTGCATC 177744 >seq200 Length=492930 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| ||||||||||| | || ||| | || Sbjct 457259 AGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGTCCATCT 457318 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || || || |||||||| || || |||||||| || | || |||||||| Sbjct 457319 TCTAGTTGTTTCCCGGCGAAAATAAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCT 457378 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | || | | || | ||| | ||||| || || | || ||||| Sbjct 457379 TGGAT-TTTGGCTTTGACATTGTCGATTGTATCTGAAGATTCTACCTCGAGGGTTATGGT 457437 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | |||||||| ||||||||||| Sbjct 457438 CTTCCCCGTCAAGGTTTTCACGAAGATCTGCAT 457470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323034141514400