Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq435 104 2e-17
>seq435
Length=220439
Score = 104 bits (114), Expect = 2e-17
Identities = 359/555 (65%), Gaps = 5/555 (1%)
Strand=Plus/Plus
Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294
|| || ||||||||||| | ||||| || | || |||||||| || || || ||
Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688
Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354
||||||||||| || |||||||| | ||||||||| || ||| || || || |||
Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 104748
Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414
|| ||||| || |||||||| | || ||| ||| | || | | |||
Sbjct 104749 ATCCCTTCCACGCAAGCAAATGCGATTAA--CCTCTCCGCA-AAACTCTCGCCTCCGTCT 104805
Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474
||||| | |||||| | || || | ||||| || |||| || |||| |
Sbjct 104806 ATCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGA 104865
Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534
|| | | || || || | ||| || || || || | | | ||| |||||
Sbjct 104866 AACAGACGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATC 104925
Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAGCTTCGGATAT 16593
|| || || |||||||| || || ||||| || || || |||||| | || || || |
Sbjct 104926 TCCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCA-CGCGCCTCCGAGAC 104984
Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653
||| ||||| || | | || | || ||| || |||||||| || ||
Sbjct 104985 TTGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGC 105044
Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713
|| || ||||| | ||| ||| || | ||| |||| | | || ||| |||||
Sbjct 105045 GAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTG 105104
Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773
| | |||| || | |||||||||||| | |||||||| || || ||||||| ||
Sbjct 105105 ACGGAGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTT 105164
Query 16774 ATACATTTTCCATAT 16788
||||| | ||| ||
Sbjct 105165 GTACATCTCCCAGAT 105179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462456411839000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |