Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq435 104 2e-17 >seq435 Length=220439 Score = 104 bits (114), Expect = 2e-17 Identities = 359/555 (65%), Gaps = 5/555 (1%) Strand=Plus/Plus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 || || ||||||||||| | ||||| || | || |||||||| || || || || Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 ||||||||||| || |||||||| | ||||||||| || ||| || || || ||| Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 104748 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 || ||||| || |||||||| | || ||| ||| | || | | ||| Sbjct 104749 ATCCCTTCCACGCAAGCAAATGCGATTAA--CCTCTCCGCA-AAACTCTCGCCTCCGTCT 104805 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| | |||||| | || || | ||||| || |||| || |||| | Sbjct 104806 ATCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGA 104865 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | | || || || | ||| || || || || | | | ||| ||||| Sbjct 104866 AACAGACGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATC 104925 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAGCTTCGGATAT 16593 || || || |||||||| || || ||||| || || || |||||| | || || || | Sbjct 104926 TCCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCA-CGCGCCTCCGAGAC 104984 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||| ||||| || | | || | || ||| || |||||||| || || Sbjct 104985 TTGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGC 105044 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713 || || ||||| | ||| ||| || | ||| |||| | | || ||| ||||| Sbjct 105045 GAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTG 105104 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 | | |||| || | |||||||||||| | |||||||| || || ||||||| || Sbjct 105105 ACGGAGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTT 105164 Query 16774 ATACATTTTCCATAT 16788 ||||| | ||| || Sbjct 105165 GTACATCTCCCAGAT 105179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462456411839000