Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_002667.1 Length=41834 Score E Sequences producing significant alignments: (Bits) Value seq2164 399 6e-107 >seq2164 Length=27727 Score = 399 bits (442), Expect = 6e-107 Identities = 415/544 (76%), Gaps = 0/544 (0%) Strand=Plus/Minus Query 38402 AATGAGTTTAGATAATTTCAAAAAGCAAACTATTACATGGGATATGATTAACCAGGCATT 38461 |||||||||||||||||| ||||| | | ||| |||||||| | | || | | || Sbjct 21269 AATGAGTTTAGATAATTTTAAAAATAGAGCGATTGTATGGGATACGGTCAATAAAGGCTT 21210 Query 38462 TGAACAGCCTATTCAAATTATGGAGGGAGATGTCAATGCAAGAACGCTACTTCTTAAGAT 38521 ||| || |||||||| ||| | || || ||||| || ||||| | |||| || Sbjct 21209 CCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAATTAAAAT 21150 Query 38522 AACTGATAATGGTTCTGTACTTGACTTAACAGGTTATTCAGTAAAATTAACCTATCAATA 38581 | ||||||||| | | |||| || || ||| ||||| ||||| | || |||||||| Sbjct 21149 ACTTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATA 21090 Query 38582 TATGTATAAATCTCAATCAGGTTTTATTATGTTGACTCCTAATGATATATCCAAGGGAGA 38641 || ||| | | ||||||||| ||||| | ||||| | | || | |||||||| Sbjct 21089 TACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAGGGAGA 21030 Query 38642 ATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCAAATTTAAT 38701 || | | |||||||||| || ||||||| | | ||| | || || | || ||||| Sbjct 21029 GTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCGAACTTAAT 20970 Query 38702 ACTTCTAAACGAAAGTTTAGAACAAGTTATTGTCAGTAAGAATTTAACATTTATATCAGA 38761 |||||| || ||| | ||| || ||||| ||||| ||||| | || ||||||||||| Sbjct 20969 ACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTTATATCAGA 20910 Query 38762 TGATTCTACAGTTACAGATTTAGCTCGAGAAGTGAATAATAAGATTGATGATTTTACAAA 38821 | ||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 20909 TAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 20850 Query 38822 ATTATTATTTGAAAACATGCCACAAGTGTTGCGTAGTGAGTTAGATGATTTAAATGCTCA 38881 ||||||||| ||||| ||||||||||| ||||||||||||| |||| ||| ||||||| Sbjct 20849 ATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTACATGCTCA 20790 Query 38882 AACTGAATCAAATAAGAGTAATATTGAGCTTAAAGCAAATTTAGCTGATATGACGAGCTT 38941 |||||||||||| ||||| ||||||||||||||||| ||| | | || ||| | ||| Sbjct 20789 AACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTGAACAACTT 20730 Query 38942 ACAA 38945 |||| Sbjct 20729 ACAA 20726 Score = 118 bits (130), Expect = 3e-22 Identities = 88/100 (88%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 39898 CATGGGAAAATATCGGTTCAGCAGTAGTTGGTTCAACAACAATATATTATTGGCAACGCA 39957 ||||| ||||||||||||| | |||| |||||||||||||||||||||||||| |||||| Sbjct 18882 CATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATATTATTGGAAACGCA 18823 Query 39958 CTGCATaaaaatataaaaaataggagaa-aaaacatgaaa 39996 ||||||||||| |||||| |||| || |||| |||||| Sbjct 18822 CTGCATAAAAA-ATAAAA---AGGAAAATAAAAAATGAAA 18787 Score = 84.2 bits (92), Expect = 6e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 39245 AAATCAAGCTGAAACTGATGTCAAAACAGCAATAACAAAGGCTACCGAAGCGCAAGCGAA 39304 ||| |||||||||| ||| | ||||| ||||| |||||||||||||||| |||||||| Sbjct 20627 AAAACAAGCTGAAAGTGAAGCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAA 20568 Query 39305 CAGTTTACCAC 39315 ||||||| ||| Sbjct 20567 CAGTTTAACAC 20557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133731928995480