Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_002703.1 Length=38347 Score E Sequences producing significant alignments: (Bits) Value seq2164 471 1e-128 >seq2164 Length=27727 Score = 471 bits (522), Expect = 1e-128 Identities = 431/544 (79%), Gaps = 0/544 (0%) Strand=Plus/Minus Query 34249 AATGAGTTTAGATAATTTCAAAAAGCAAACTATTACATGGGATATGATTAACCAGGCATT 34308 |||||||||||||||||| ||||| | | ||| |||||||| | | || | | || Sbjct 21269 AATGAGTTTAGATAATTTTAAAAATAGAGCGATTGTATGGGATACGGTCAATAAAGGCTT 21210 Query 34309 TGAACAGCCCATTCAAATTATGGAGGGAGATGTCAATGCAAGAACGCTACTTCTTAAGAT 34368 ||| || |||||||| ||| | || || ||||| || ||||| | |||| || Sbjct 21209 CCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAATTAAAAT 21150 Query 34369 AACTGATAATGGTTCTGTACTTGACTTAACAGGTTATTCAGTAAAATTAACCTATCAATA 34428 | ||||||||| | | |||| || || ||| ||||| ||||| | || |||||||| Sbjct 21149 ACTTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATA 21090 Query 34429 TATGTATAAATATCAATCAGGTTTTATTATGTTAACTCCTAATGATATATCCAAGGGAGA 34488 || ||| | | ||||||||| ||||| | ||||| | | || | |||||||| Sbjct 21089 TACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAGGGAGA 21030 Query 34489 ATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCAAATTTAAT 34548 || | | |||||||||| || ||||||| | | ||| | || || | || ||||| Sbjct 21029 GTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCGAACTTAAT 20970 Query 34549 ACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGTAAGAATCTTACATTTATATCAGA 34608 |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 20969 ACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTTATATCAGA 20910 Query 34609 TGATTCTACAGTTACAAGTTTAACTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 34668 | ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 20909 TAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 20850 Query 34669 ATTATTATTGGAAAATATGCCACAGGTTATGCGTAGTGAGTTGAATGATTTACATGCTCA 34728 |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| Sbjct 20849 ATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTACATGCTCA 20790 Query 34729 AACTGATTCAAACAAGAGCAATATTGAGCTTAAAGCAAATTTAGCTGATATGACGAGCTT 34788 |||||| ||||||||||||||||||||||||||||| ||| | | || ||| | ||| Sbjct 20789 AACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTGAACAACTT 20730 Query 34789 ACAA 34792 |||| Sbjct 20729 ACAA 20726 Score = 176 bits (194), Expect = 1e-39 Identities = 106/112 (95%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 35210 TTAAGTACAAATCAAAATGTCGCAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 35269 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 20668 TTAATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 20609 Query 35270 GCCAAAAATGCAATGGCAAAGGCTACCAAAGCACAAGCGAACAGTTTACCAC 35321 ||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 20608 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTAACAC 20557 Score = 111 bits (122), Expect = 4e-20 Identities = 88/103 (85%), Gaps = 6/103 (6%) Strand=Plus/Minus Query 36213 CATGGCAGAACATCGGTTCAGCAGTAATTGGTTCAACGACAATATATTATTGGCAACGCA 36272 ||||||| || |||||||| | ||||||||||||||| ||||||||||||||| |||||| Sbjct 18882 CATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATATTATTGGAAACGCA 18823 Query 36273 CTGCATAAAAATATAAAAAATAGGAGAGTAAAATGAATCAAAT 36315 ||||||||||| |||||| |||| | ||||| ||| |||| Sbjct 18822 CTGCATAAAAA-ATAAAA---AGGAAAATAAAA--AATGAAAT 18786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122574803040670