Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_002747.1 Length=37667 Score E Sequences producing significant alignments: (Bits) Value seq2164 426 4e-115 >seq2164 Length=27727 Score = 426 bits (472), Expect = 4e-115 Identities = 421/544 (77%), Gaps = 0/544 (0%) Strand=Plus/Minus Query 31146 AATGAGTTTAGATAATTTCAAAAAGCAAACTATTACATGGGATATGATTAACCAGGCATT 31205 |||||||||||||||||| ||||| | | ||| |||||||| | | || | | || Sbjct 21269 AATGAGTTTAGATAATTTTAAAAATAGAGCGATTGTATGGGATACGGTCAATAAAGGCTT 21210 Query 31206 TGAACAGCCCATTCAAATTATGGAGGGAGATGTCAATGCAAGAACGCTACTTCTTAAGAT 31265 ||| || |||||||| ||| | || || ||||| || ||||| | |||| || Sbjct 21209 CCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAATTAAAAT 21150 Query 31266 AACTGATAATGGTTCTGTACTTGACTTAACAGGTTATTCAGTAAAATTAACCTATCAATA 31325 | ||||||||| | | |||| || || ||| ||||| ||||| | || |||||||| Sbjct 21149 ACTTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATA 21090 Query 31326 TATGTATAAATCTCAATCAGGTTTTATTATGTTAACTCCTAATGATATATCCAAGGGAGA 31385 || ||| | | ||||||||| ||||| | ||||| | | || | |||||||| Sbjct 21089 TACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAGGGAGA 21030 Query 31386 ATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCAAATTTAAT 31445 || | | |||||||||| || ||||||| | | ||| | || || | || ||||| Sbjct 21029 GTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCGAACTTAAT 20970 Query 31446 ACTTCTCAATGAAGATAAAGAGCAGGTTATTGTCAGTAAGAATTTAACATTTATATCAGA 31505 |||||||||||||||||||||||||||||| ||||| ||||| | || ||||||||||| Sbjct 20969 ACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTTATATCAGA 20910 Query 31506 TAATTCTACAGTTACAGATTTAGCTCAAGAAGTGAATAATAAGATTGATGATTTTACAAA 31565 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 20909 TAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 20850 Query 31566 ATTATTATTAGGAAAAATGCCACAAGTTTTGCGTAGTGAGTTGAATGATTTACAGGCTAA 31625 ||||||||| | ||| ||||||||||| ||||||||||||||||||| ||||| ||| | Sbjct 20849 ATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTACATGCTCA 20790 Query 31626 AACTGATTCAAATGCGAGCAATATTGAACTAAAAGCAAATTTAGCTGATATGACAAGCTT 31685 |||||| ||||| |||||||||||| || ||||| ||| | | || ||| | ||| Sbjct 20789 AACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTGAACAACTT 20730 Query 31686 ACAA 31689 |||| Sbjct 20729 ACAA 20726 Score = 190 bits (210), Expect = 5e-44 Identities = 108/110 (98%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 32040 AATCACAAATAAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAAGC 32099 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20666 AATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAAGC 20607 Query 32100 CAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTACCAC 32149 |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 20606 CAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTAACAC 20557 Score = 109 bits (120), Expect = 1e-19 Identities = 87/102 (85%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 33084 ATGGGAAAATATCGGTTCAGCAGTGATTGGTTCAACAACAATATATTATTGGCTACGCAC 33143 |||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||| Sbjct 18881 ATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATATTATTGGAAACGCAC 18822 Query 33144 TGCATAAAAACATAAAAAATAGGAGAGTAAAATGAATCAAAT 33185 |||||||||| |||||| |||| | ||||| ||| |||| Sbjct 18821 TGCATAAAAA-ATAAAA---AGGAAAATAAAA--AATGAAAT 18786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120399051492270