Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq549 91.5 1e-13 seq435 91.5 1e-13 >seq549 Length=172529 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 ||||| |||||||||||||| || ||||||| || | ||||| ||||| |||| Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || |||||||| || || ||||||||||||||||| ||| || || || || ||| Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 30722 Query 14324 ATTCCCTCAACTGCAGCAAACGC 14346 || || || || |||||| || Sbjct 30721 ATCCCTTCCACGCAAGCAAAAGC 30699 >seq435 Length=220439 Score = 91.5 bits (100), Expect = 1e-13 Identities = 364/562 (65%), Gaps = 17/562 (3%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 ||||| |||||||||||||| || ||||||| || | ||||| || || || | Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 |||||||| | || |||||||||| ||||||||| ||| || || || || ||| Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 104748 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG-A 14382 || || || || |||||| || ||||| | ||||| | | || | | || Sbjct 104749 ATCCCTTCCACGCAAGCAAATGCGATTAACC--TCTCC--GCAAAACTCTCGCCTCCGTC 104804 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 |||||| | |||||| || | || || | | | || || ||||| |||| Sbjct 104805 TATCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATG 104864 Query 14443 AAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTAT-CAATAAGTAAG-CTAT 14498 ||| | | | | |||||| ||| | |||| ||||| || | ||| || ||| || | Sbjct 104865 AAACAGACGGTTCTTCTCAGTAGAATCCTTG--ATGTAGGTCTCCAACAA--AAGACTGT 104920 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||| || ||||| || || || || || ||||| || || || ||| | || || | Sbjct 104921 ACATCTCCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCG 104980 Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 | ||| || ||| || | |||| | ||| || || || |||||| | Sbjct 104981 AGACTTGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGG 105040 Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCC 14678 | || || || || | | || ||| |||| || ||| ||| | || |||| || Sbjct 105041 CAGCGAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCC 105100 Query 14679 AAT--CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 | | ||| | ||| ||| ||||| || || ||| | |||||||| || |||| Sbjct 105101 AGTGACGG--AGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGC 105158 Query 14737 TTTTTTATACATTACCCATATT 14758 || || ||||| |||| ||| Sbjct 105159 CTTCTTGTACATCTCCCAGATT 105180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482287628088200