Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq185 87.8 1e-12 >seq185 Length=543210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||||||| || || || || || |||||||| ||| Sbjct 499357 CCACCACGGAGACGAAGGACAAGGTGAAGTGTGGACTCCTTCTGGATATTGTAGTCTGCC 499298 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||||||| || || || ||| |||| | |||||||| || ||| Sbjct 499297 AGGGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTTTGTTGGTCTGGGGGA 499238 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | ||| || | ||| ||||| | |||| Sbjct 499237 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCTGAGCTCTCGACC 499178 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| | || || ||||| || || ||||||||||||||| Sbjct 499177 TCCAGAGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCATT 499130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379299547403175