Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq435 237 2e-57 seq549 159 4e-34 seq14 105 8e-18 seq23 95.1 2e-14 >seq435 Length=220439 Score = 237 bits (262), Expect = 2e-57 Identities = 411/595 (69%), Gaps = 2/595 (0%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||| || || || || || |||| || || ||||| || || || || Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || |||||||| ||||| ||||| ||||||||||| | | || || || || || Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 104748 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33761 || ||||| || |||||| || || | ||||| || ||| ||| | | |||| Sbjct 104749 ATCCCTTCCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTCTATC 104808 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 ||| | |||||| || |||||||| ||||| |||| ||| || ||||||| ||| Sbjct 104809 CACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAAC 104868 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 ||| ||| || ||| || ||| || | || || || | ||||||||| ||||| ||| Sbjct 104869 AGACGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCC 104928 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 || || || || ||||| || ||||| || ||||||||| | ||||| | | || Sbjct 104929 GAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGG 104988 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 |||||| | || || | || | ||| || || ||||||||| ||| || || Sbjct 104989 ACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGAAG 105048 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061 || || | || || || || | ||| ||||| || || || || | ||| | | | Sbjct 105049 AAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACGG 105108 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 34121 | |||| ||| | ||| || ||||| | |||||||| || || || ||||| || ||| Sbjct 105109 AGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTTGTAC 105168 Query 34122 ATATTCCAGATGTCAT-GATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || | |||||| | || ||||||| |||||||| ||| |||| | ||| ||| Sbjct 105169 ATCTCCCAGAT-TGATGGATATTGAATTGGGAACATACAGAATCGGTCTGGGTTT 105222 >seq549 Length=172529 Score = 159 bits (176), Expect = 4e-34 Identities = 383/577 (66%), Gaps = 2/577 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||| || || || || || |||| || || ||||| ||||| || || Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | ||||||||||| | ||||||||| | | || || || || || Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 30722 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33761 || ||||| || |||||| |||| || || || | ||| |||| | | ||| Sbjct 30721 ATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACTCTCGCTCCCGTCAATC 30662 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 ||| ||||| |||||||| || || |||| |||||| || |||| ||| Sbjct 30661 CACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAAC 30602 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 || || || || | | ||| || | |||||| || | || |||||| ||||| || Sbjct 30601 AGGCGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCG 30542 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 || || || || ||||| || ||||| |||||||| ||| | ||||| | | || Sbjct 30541 GAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGG 30482 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 || ||| | || || | || | |||||| || || |||||| ||| || || Sbjct 30481 ACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAG 30422 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061 || || | ||||| || || | || ||||| || || || || | ||| | | Sbjct 30421 AAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCGG 30362 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 34121 ||||| || | ||| || || || | |||||||| || ||||| || || || ||| Sbjct 30361 ATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTAC 30302 Query 34122 ATATTCCAGATGTCAT-GATATTGGATTGGGAAAATA 34157 || | |||||| | || | || || || ||||| ||| Sbjct 30301 ATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATA 30266 >seq14 Length=2767599 Score = 105 bits (116), Expect = 8e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | ||| |||||||| || || |||||| | ||| | | || | Sbjct 700777 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCAAATGG 700836 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 ||||| | |||||||| || ||||| || |||||||| || || || | ||| | | Sbjct 700837 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 700896 Query 63783 ATGTGCTGAGGTCTTTCAACAA--TTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 ||||||||||| ||||| |||| ||| ||| | |||| | ||||||| |||| | Sbjct 700897 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTG--GACCTTCAGGAGGTAGGATCTTTCAA 700954 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || || || ||||| || | || |||||| || || || || || Sbjct 700955 GCGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGAT 701003 Score = 82.4 bits (90), Expect = 1e-10 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | || || | ||| | || ||||||||||||| || || Sbjct 700398 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCC 700457 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || ||||| | |||| ||||||| || || || Sbjct 700458 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 700517 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || ||| ||||| ||||| |||| ||| | || || || || || ||||| || Sbjct 700518 TACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATAT 700577 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 ||||| || |||||||| ||||| Sbjct 700578 TCCTTCAATACTATCATCTTTCATG 700602 >seq23 Length=2045696 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 63650 TTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63709 |||| | | || ||||| ||||| || | ||| |||||||| || || |||||| | Sbjct 906322 TTGGGGTCTAGGTGTTCCAGCATTGAAAAGGGTGGGAGAAGCATGTGTGAACCATCGCTG 906263 Query 63710 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGC 63769 ||| | | || ||| || | | || | || ||||| || |||||||| || || Sbjct 906262 AGACATCAAATGGTATGTTTTGAGTGCCAAATCAATATCATCTTTGTGAATTCCAACAGC 906203 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTA 63829 || | ||||| |||||||||||| ||||| |||| || | | |||| || ||| Sbjct 906202 AACCCTCATTAGCATGTGCTGAGGCCTTTCCACAACCTTCCCTTGGACCTTCAGCAGGTA 906143 Query 63830 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||| |||| | || || || ||||| || | ||| |||||| || || || || || Sbjct 906142 GGATCTTTCAAGGGTCTTGAAGCCAAAGTAATCGTAGTCAAAGTCCCGATCATAGATGAT 906083 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 906677 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 906618 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || ||||| | |||| ||||||| || || || || Sbjct 906617 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 906558 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 || ||| ||||| || || |||| ||| | || || || || || ||||| || Sbjct 906557 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 906498 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 ||||| || |||||||| ||||| Sbjct 906497 TCCTTCAATACTATCATCTTTCATG 906473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629741903797200