Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq435 215 7e-51 seq549 131 2e-25 seq14 104 3e-17 seq23 100 4e-16 seq131 87.8 2e-12 >seq435 Length=220439 Score = 215 bits (238), Expect = 7e-51 Identities = 417/609 (68%), Gaps = 10/609 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||| || || || || || |||| || || ||||| || || || || Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || |||||||| ||||| ||||| ||||||||||| | | |||| | || || || || Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 104747 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATG 36333 || ||||| || ||||| || || | ||||| || ||| || | | ||| Sbjct 104748 TATCCCTTCCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTC--- 104804 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||||| | |||||| || |||||||| ||||| |||| ||||| || |||| Sbjct 104805 TATCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATG 104864 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 ||| ||| ||| || ||| || ||| || | || || || | ||||||||| ||||| Sbjct 104865 AAACAGACGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACAT 104924 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 ||||| || || || ||||| || || || || ||||||||| | ||||| | | Sbjct 104925 CTCCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGAC 104984 Query 36514 CTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 || |||||| | || || | || | ||| || || ||||| ||| ||| || Sbjct 104985 TTGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGC 105044 Query 36574 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATC 36633 || || || | || || || || | ||| |||| || || || || | ||| | Sbjct 105045 GAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTG 105104 Query 36634 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 36693 | || |||| ||| | ||| || ||||| | |||||||| || || || ||||| || Sbjct 105105 ACGGAGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTT 105164 Query 36694 ATACATATTCCAGATGTCAT-GATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 ||||| | |||||| | || ||||||||||||| || ||| |||| | | | |||| Sbjct 105165 GTACATCTCCCAGAT-TGATGGATATTGAATTGGGAACATACAGAATCGGTCTGGGTTTT 105223 Query 36753 TTGCAAGGA 36761 || |||| Sbjct 105224 CAGCGAGGA 105232 >seq549 Length=172529 Score = 131 bits (144), Expect = 2e-25 Identities = 379/578 (66%), Gaps = 4/578 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || |||||||| || || || || || |||| || || ||||| ||||| || || Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||| | ||||||||||| | ||||||||| | | |||| | || || || || Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 30723 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 || ||||| || ||||| |||| || || || | ||| | || | | || Sbjct 30722 TATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACTCTCGCTCCCGTCAAT 30663 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 |||| ||||| |||||||| || || |||| || || ||||||| ||| Sbjct 30662 CCACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAA 30603 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 || || || || | | ||| || | ||| || || | || |||||| ||||| || Sbjct 30602 CAGGCGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTC 30543 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 || || || || ||||| || || || |||||||| ||| | ||||| | | || Sbjct 30542 GGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTG 30483 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 || ||| | || || | || | |||||| || || || ||| ||| || || Sbjct 30482 GACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAA 30423 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATT 36636 || || | ||||| || || | || |||| || || || || | ||| | Sbjct 30422 GAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCG 30363 Query 36637 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 36696 |||||| || | ||| || || || | |||||||| || ||||| || || || || Sbjct 30362 GATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTA 30303 Query 36697 CATATTCCAGATGTCAT-GATATTGAATTGGAAAAATA 36733 ||| | |||||| | || | || ||||| || || ||| Sbjct 30302 CATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATA 30266 >seq14 Length=2767599 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | ||| |||||||| || || |||||| | ||| | | || | Sbjct 700777 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCAAATGG 700836 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||| | |||||||| || ||||| || |||||||| || || || | ||| | | Sbjct 700837 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 700896 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||||||||| ||||| || | ||| | | |||| | ||||||| |||| | Sbjct 700897 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAGGATCTTTCAAGC 700956 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 66690 || || || ||||| || | || |||||| || || || || || | |||| Sbjct 700957 GTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 701011 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | || || | ||| | || ||||||||||||| || || Sbjct 700398 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCC 700457 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| ||||| ||||| |||||| | ||||| || || || Sbjct 700458 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 700517 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 || ||| ||||| ||||| |||| ||| | || || || || |||||||| || Sbjct 700518 TACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATAT 700577 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 || || ||||||||||| ||||| Sbjct 700578 TCCTTCAATACTATCATCTTTCATG 700602 >seq23 Length=2045696 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 906677 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 906618 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || ||||| |||||| | ||||| || || || || Sbjct 906617 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 906558 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 || ||| ||||| || || |||| ||| | || || || || |||||||| || Sbjct 906557 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 906498 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 || || ||||||||||| ||||| Sbjct 906497 TCCTTCAATACTATCATCTTTCATG 906473 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | ||| |||||||| || || |||||| | ||| | | || | Sbjct 906309 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGTGTGAACCATCGCTGAGACATCAAATGG 906250 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || | | || | || ||||| || |||||||| || || || | ||||| | Sbjct 906249 TATGTTTTGAGTGCCAAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATTAGC 906190 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||||||||| ||||| || | ||| | | |||| || ||||||| |||| | Sbjct 906189 ATGTGCTGAGGCCTTTCCACAACCTTCCCTTGGACCTTCAGCAGGTAGGATCTTTCAAGG 906130 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 66690 || || || ||||| || | ||| |||||| || || || || || | |||| Sbjct 906129 GTCTTGAAGCCAAAGTAATCGTAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 906075 >seq131 Length=684295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 65955 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 66014 |||||||| || | ||||||| | ||| || || | ||||||| ||| |||| || Sbjct 385980 TCTCTTTCATACTGGGTATACAGTTTTTCAAATTCTTGTCCCCAACAATTAGCCAAACCT 385921 Query 66015 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC-CTTC--ACTCGTTTCATA 66071 ||| ||| || || | ||| ||||| | |||||| | || |||| || ||| Sbjct 385920 GGAGCCTCACTAGGGCAAAACAAAGACCATTT---GTCATCACCTCGAACTCTTTCCATG 385864 Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTC 66124 ||||||||||||||||||||||| | ||||| |||| | || |||||| || Sbjct 385863 AAGAGATCAGGAATCCAAAGAGCAAGGAATAAGTCTCGAGCTCGATGTTCTTC 385811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658093695856600