Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq663 118 1e-21 seq189 104 2e-17 seq200 93.3 4e-14 seq26 93.3 4e-14 seq461 91.5 1e-13 seq93 87.8 2e-12 seq273 84.2 2e-11 seq25 82.4 8e-11 >seq663 Length=136023 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||||| ||||||||||| || || |||||||| | Sbjct 59741 CCACCACGGAGACGCAAGACAAGGTGAAGGGTAGACTCTTTCTGGATATTATAATCCGCC 59800 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || | ||| || || ||| |||||||||| || ||||| || || Sbjct 59801 AAGGTTCTTCCATCCTCCAACTGCTTTCCGGCAAAGATCAGACGCTGTTGATCCGGTGGG 59860 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||||||| || | | || | |||||| || ||||||| Sbjct 59861 ATGCCCTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 59920 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||| |||||||| || || || || || |||||| Sbjct 59921 TCCAGTGTAATCGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCATA 59968 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || ||||| || |||||| || || | ||||| |||||||| || || | Sbjct 60460 CTCCTTCTGAATATTGTAATCGGCCAGAGTCCGACCATCTTCTAGCTGTTTTCCGGCGAA 60519 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||||| |||||| ||||| || || ||||| || ||||| ||| | || | ||| | Sbjct 60520 GATCAAACGTTGTTGATCCGGCGGGATGCCCTCCTTGTCT-TGAATCTTGGCTTTGACGT 60578 Query 139693 T-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 | || | |||||| || ||||||||||| ||| | ||||||||||||| ||||| | Sbjct 60579 TGTCGATGGTGTCGCTGCTCTCCACCTCAAGGGTTATAGTCTTGCCGGTCAGAGTTTTCA 60638 Query 139752 CGAATATTTGCAT 139764 |||| || ||||| Sbjct 60639 CGAAGATCTGCAT 60651 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || ||||| ||||||||| || || | |||||||||||||| || || | Sbjct 60232 CTCCTTCTGAATATTATAATCGGCCAAAGTCCGACCATCTTCGAGCTGTTTTCCGGCGAA 60291 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCT 139691 ||||| |||||| ||||| || || ||||| || || || ||| | || | || | | Sbjct 60292 GATCAAACGTTGTTGATCCGGCGGGATGCCCTCCTTATC-TTGAATCTTGGCCTTGACGT 60350 Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 || | |||||| || ||||||||| | ||| | ||||| || ||||| || || | Sbjct 60351 TGTCGATGGTGTCGCTGCTCTCCACCTCTAGGGTAATGGTCTTCCCTGTCAAGGTCTTAA 60410 Query 139752 CGAATATTTGCATAGCT 139768 | ||||| |||||| || Sbjct 60411 CAAATATCTGCATACCT 60427 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || | ||||| ||||||||||| || || || || || | Sbjct 59969 CCCCCTCGGAGACGGAGGACAAGGTGAAGGGTAGACTCTTTCTGGATATTGTAGTCAGCC 60028 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||| || || ||| |||||| |||||| ||||| || || Sbjct 60029 AGAGTCCGGCCATCTTCGAGCTGCTTTCCTGCAAAGATCAAACGTTGTTGATCAGGTGGG 60088 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | |||||| || ||| || Sbjct 60089 ATGCCCTCCTTGTC-TTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCTAC 60147 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| | || | || || || ||||| || || || ||||| |||||| || Sbjct 60148 CTCTAGAGTAATGGTTTTCCCTGTCAAGGTCTTCACAAATATCTGCATACCT 60199 >seq189 Length=529659 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | | || ||| | ||| | || || || ||||| |||||||||||| Sbjct 461301 CCGCCGCGAAGCCTCAGAACAAGGTGGAGGGTGGATTCCTTTTGGATGTTATAATCGGCA 461242 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| ||||| ||||| ||||| | ||||| ||||||||||| ||||| Sbjct 461241 AGGGTACGGCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGGCGTTGCTGATCAGGAGGG 461182 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | || | ||| || | ||| || Sbjct 461181 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACGTTGTCGATTGTATCAGAACTCTCGACT 461122 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTT 139769 |||| || | || ||||| |||| ||||| ||||| || ||||| |||| Sbjct 461121 TCAAGAGTTATGGTTTTGCCTGTCAGGGTTTTCACGAAGATCTGCAT-GCTT 461071 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| ||||||| || | || | |||||||| ||||||||||||||||| Sbjct 461757 CCGCCTCTCAAACGCAGTACCAGATGCAGAGTAGACTCCTTTTGAATGTTATAATCCGCA 461698 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || ||| ||||| | ||| || || ||| |||| || | |||||||| || || Sbjct 461697 AGAGTCCTCCCCTCTTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGGGGA 461638 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | |||| | | || | ||| || | | || || Sbjct 461637 ATCCCTTCCTTGTC-CTGAATCTTGGCTTTAACGTTATCAATTGTATCAGAGCTTTCAAC 461579 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | ||||| || || || || || ||||| |||||||| Sbjct 461578 CTCAAGCGTGATTGTCTTTCCAGTTAAAGTCTTAACGAAGATTTGCAT 461531 >seq200 Length=492930 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/239 (69%), Gaps = 5/239 (2%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | || || || || |||||||| || || | ||| | || | ||||| Sbjct 457262 ACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGTCCA-TCTTC 457320 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || ||||| || || | || ||||||||||| || || || |||||||| ||||| Sbjct 457321 TAGTTGTTTCCCGGCGAAAATAAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTG 457380 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 |||||| ||| | | || | ||| || | | || ||||| | ||| | ||||| Sbjct 457381 GATTTTGGCTTTGACATTGTCGATTGTATCTGAAGATTCTACCTCGAGGGTTATGGTCTT 457440 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATG---TTTTACCTTCCTCTTATT 139790 || ||||| ||||| ||||| || ||||| ||| || | || | |||||||| || Sbjct 457441 CCCCGTCAAGGTTTTCACGAAGATCTGCATGTCTTCTGGTTTCTTGCTTTCCTCTTTTT 457499 >seq26 Length=1968749 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | ||| ||||| | || || || ||||| ||||||||||| Sbjct 78467 CCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 78408 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || |||||||| |||||| |||||| | |||||||| || || Sbjct 78407 AGGGTTCGTCCA-TCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGG 78349 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || ||| | | || | || || | | ||||| Sbjct 78348 GATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCTTTCCAC 78289 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| || | ||||| || || |||||||| Sbjct 78288 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 78241 >seq461 Length=207379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || ||||| || |||||| || || | ||||| |||||||| || || | Sbjct 160146 CTCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCCAGCTGTTTTCCGGCGAA 160087 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||| ||||| || ||||| || || |||||||| ||||| ||| | || | || | Sbjct 160086 GATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTCT-TGAATCTTGGCCTTGACGT 160028 Query 139693 T-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 | || | |||||| || ||||||||| | || | ||||||||||| | ||||| | Sbjct 160027 TGTCGATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTCA 159968 Query 139752 CGAATATTTGCATA 139765 |||| || |||||| Sbjct 159967 CGAAGATCTGCATA 159954 >seq93 Length=881566 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || || | ||| | || ||| Sbjct 480791 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCATCCTCG 480850 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 |||||||| ||||| | || ||||| || || || || || || ||||| ||||| || Sbjct 480851 AGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTGTC-TTG 480909 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | || | ||||| | || ||| ||||| | ||| | ||||| Sbjct 480910 AATCTTGGCTTTGACATTGTCGATAGTGTCTGAGGACTCAACCTCGAGGGTTATTGTCTT 480969 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| ||||| ||||| || ||||| Sbjct 480970 GCCCGTCAAGGTTTTCACGAAGATCTGCAT 480999 >seq273 Length=351239 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || || | |||| || ||| Sbjct 177535 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCATCCTCG 177594 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 |||||||| ||||| | || ||||| || || || || || || ||||| ||||| || Sbjct 177595 AGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCTGGTGGGATACCTTCCTTGTC-TTG 177653 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | || | ||||| | || ||| ||||| | ||| | ||||| Sbjct 177654 AATCTTGGCTTTGACATTGTCGATCGTGTCTGAGGACTCAACCTCGAGGGTTATTGTCTT 177713 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| ||||| || ||||| Sbjct 177714 ACCCGTCAAGGTTTTCACGAAGATCTGCAT 177743 >seq25 Length=1969896 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||||| ||| ||||| || || || || ||||| | || | | || Sbjct 1926658 CAAAACCAAGTGAAGCGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTTCGCCCATC 1926717 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | |||||||||||| | |||| | ||||||||| ||||| |||||||| ||||| Sbjct 1926718 TTCTAATTGTTTACCAGCAAAAATCAATCTTTGCTGATCAGGAGGGATGCCTTCCTTGTC 1926777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496004379308000