Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq435 228 1e-54 seq549 163 4e-35 seq14 104 3e-17 seq23 100 4e-16 >seq435 Length=220439 Score = 228 bits (252), Expect = 1e-54 Identities = 409/595 (69%), Gaps = 2/595 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||| || || || || || |||| || | ||||| || || || || Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || |||||||| ||||| ||||| ||||||||||| | ||| ||| || || || Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 104748 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATC 50139 || ||||| || ||||| || | | ||||| || |||| ||| | | |||| Sbjct 104749 ATCCCTTCCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTCTATC 104808 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 ||| | |||||| || |||||||| ||||| |||| ||| || ||||||| ||| Sbjct 104809 CACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAAC 104868 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 ||| ||| || ||| || ||| || | || || || | ||||||||| ||||| ||| Sbjct 104869 AGACGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCC 104928 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 || || || || ||||| || ||||| || ||||||||| | ||||| | | || Sbjct 104929 GAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGG 104988 Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 |||||| | || || | || | ||| || || ||||| ||| ||| || || Sbjct 104989 ACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGAAG 105048 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439 || || | || || || || ||||| |||| || || || || | ||| | | | Sbjct 105049 AAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACGG 105108 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 | |||| ||| | ||| || ||||| | |||||||| || || || ||||| || ||| Sbjct 105109 AGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTTGTAC 105168 Query 50500 ATATTCCAGATGTCAT-GATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || | |||||| | || ||||||| |||||||| ||| |||| | ||| ||| Sbjct 105169 ATCTCCCAGAT-TGATGGATATTGAATTGGGAACATACAGAATCGGTCTGGGTTT 105222 >seq549 Length=172529 Score = 163 bits (180), Expect = 4e-35 Identities = 384/577 (67%), Gaps = 2/577 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||| || || || || || |||| || | ||||| ||||| || || Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| | ||||||||||| | ||||||||| | ||| ||| || || || Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 30722 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATC 50139 || ||||| || ||||| ||||| || || || | |||| |||| | | ||| Sbjct 30721 ATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACTCTCGCTCCCGTCAATC 30662 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 ||| ||||| |||||||| || || |||| |||||| || |||| ||| Sbjct 30661 CACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAAC 30602 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 || || || || | | ||| || | |||||| || | || |||||| ||||| || Sbjct 30601 AGGCGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCG 30542 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 || || || || ||||| || ||||| |||||||| ||| | ||||| | | || Sbjct 30541 GAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGG 30482 Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 || ||| | || || | || | |||||| || || || ||| ||| || || Sbjct 30481 ACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAG 30422 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439 || || | ||||| || || || || |||| ||| || || || | ||| | | Sbjct 30421 AAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCGG 30362 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 ||||| || | ||| || || || | |||||||| || ||||| || || || ||| Sbjct 30361 ATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTAC 30302 Query 50500 ATATTCCAGATGTCAT-GATATTGGATTGGGAAAATA 50535 || | |||||| | || | || || || ||||| ||| Sbjct 30301 ATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATA 30266 >seq14 Length=2767599 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | ||| |||||||| || || |||||| | ||||| | || | Sbjct 700777 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCAAATGG 700836 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 ||||| | |||||||| || ||||| || |||||||| || || || | ||| | | Sbjct 700837 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 700896 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||||||||| ||||| || | ||| | | |||| | ||| ||| |||| | Sbjct 700897 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAGGATCTTTCAAGC 700956 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569 || || || ||||| || | || |||||| || || || || || | |||| Sbjct 700957 GTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 701011 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || || | ||| | || ||||||||||||| || || Sbjct 700398 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCC 700457 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| ||||| ||||| |||||| ||||||| || || || Sbjct 700458 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 700517 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| ||||| ||||| |||| ||| | || || || || |||||||| || Sbjct 700518 TACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATAT 700577 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 || || || |||||||| ||||| Sbjct 700578 TCCTTCAATACTATCATCTTTCATG 700602 >seq23 Length=2045696 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 906677 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 906618 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || ||||| |||||| ||||||| || || || || Sbjct 906617 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 906558 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| ||||| || || |||| ||| | || || || || |||||||| || Sbjct 906557 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 906498 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 || || || |||||||| ||||| Sbjct 906497 TCCTTCAATACTATCATCTTTCATG 906473 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | ||| |||||||| || || |||||| | ||||| | || | Sbjct 906309 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGTGTGAACCATCGCTGAGACATCAAATGG 906250 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || | | || | || ||||| || |||||||| || || || | ||||| | Sbjct 906249 TATGTTTTGAGTGCCAAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATTAGC 906190 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||||||||| ||||| || | ||| | | |||| || ||| ||| |||| | Sbjct 906189 ATGTGCTGAGGCCTTTCCACAACCTTCCCTTGGACCTTCAGCAGGTAGGATCTTTCAAGG 906130 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569 || || || ||||| || | ||| |||||| || || || || || | |||| Sbjct 906129 GTCTTGAAGCCAAAGTAATCGTAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 906075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718182473068600