Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq435 104 2e-17 seq549 100 3e-16 >seq435 Length=220439 Score = 104 bits (114), Expect = 2e-17 Identities = 369/563 (66%), Gaps = 19/563 (3%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||| |||||||||||||| || ||||||| || | ||||| || || || | Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 |||||||| | || |||||||||| ||||||||| ||| ||| ||| || || ||| Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 104748 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG-A 14050 || || || || |||||| || ||||| | ||||| | | || | | || Sbjct 104749 ATCCCTTCCACGCAAGCAAATGCGATTAACC--TCTCC--GCAAAACTCTCGCCTCCGTC 104804 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 |||||| | |||||| || | || || | | | || || ||||| |||| Sbjct 104805 TATCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATG 104864 Query 14111 AAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTAT-CAATAAGTAAG-CTAT 14166 ||| | | | |||||| ||| | |||| ||||| || | ||| || ||| || | Sbjct 104865 AAACAGACGGTTCTTCTCAGTAGAATCCTTG--ATGTAGGTCTCCAACAA--AAGACTGT 104920 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTCC 14225 |||| || ||||| || || || || || ||||| || || || |||||| | || ||| Sbjct 104921 ACATCTCCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCA-CGCGCCTCC 104979 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 || ||| ||||| || | |||| | ||| || || || |||||| Sbjct 104980 GAGACTTGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAG 105039 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 || || || || || | | || ||| |||| || ||| ||| | || |||| | Sbjct 105040 GCAGCGAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCC 105099 Query 14346 CAAT--CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14403 || | ||| | ||| ||| ||||| || || ||| | |||||||| || ||| Sbjct 105100 CAGTGACGG--AGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAG 105157 Query 14404 CTTTTTTATACATTACCCATATT 14426 | || || ||||| |||| ||| Sbjct 105158 CCTTCTTGTACATCTCCCAGATT 105180 >seq549 Length=172529 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||| |||||||||||||| || ||||||| || | ||||| ||||| |||| Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || |||||||| || || ||||||||||||||||| ||| ||| ||| || || ||| Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 30722 Query 13992 ATTCCCTCAACTGCAGCAAACGC 14014 || || || || |||||| || Sbjct 30721 ATCCCTTCCACGCAAGCAAAAGC 30699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479670342691000