Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq663 109 4e-19 seq461 107 1e-18 seq78 84.2 2e-11 seq26 84.2 2e-11 >seq663 Length=136023 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | || | |||| ||||||||||| || | ||||||||||| | Sbjct 60425 CCTCCACGGAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGCC 60484 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | ||||| ||||| || ||||| || |||||||| | ||| Sbjct 60485 AGAGTCCGACCATCTTCTAGCTGTTTTCCGGCGAAGATCAAACGTTGTTGATCCGGCGGG 60544 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| ||||||| || | | ||||||| ||| || Sbjct 60545 ATGCCCTCCTTGTCTTGAATCTTGGCTTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 60604 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | |||||||| || ||||| ||||||||||| || || ||||| || || Sbjct 60605 TCAAGGGTTATAGTCTTGCCGGTCAGAGTTTTCACGAAGATCTGCATCTTTTT 60657 >seq461 Length=207379 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| ||||| |||| ||| | ||| | ||| ||||||||| | ||| ||||| | | Sbjct 160637 CCTCCGCGCAGCCTTAGCACAAGATGAAGAGTTGACTCCTTTTGAATATTATAATCCGCC 160578 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||| || || || ||||| ||||||| ||| || || | || Sbjct 160577 AGAGTCCTGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGG 160518 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| || | ||||| || | | ||||||| ||| || Sbjct 160517 ATCCCCTCCTTGTC-CTGAATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCAC 160459 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||| ||||| ||||||||||| || ||||||||||| ||||| Sbjct 160458 CTCTAGCGTGATAGTCTTTCCGGTTAGGGTCTTCACAAAAATCTGCAT 160411 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | || | ||||| ||||||||||| || | ||||||||||| | Sbjct 160181 CCTCCTCGGAGACGGAGGACAAGATGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGCC 160122 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || |||| ||||| ||||| || || | ||||||||||| | || Sbjct 160121 AAAGTTCGGCCATCTTCCAGCTGTTTTCCGGCGAAGATTAGACGCTGTTGATCCGGTGGG 160062 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | ||||| || | | ||||||| ||| || Sbjct 160061 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 160002 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | || || || || ||||| || |||||||| || || ||||| || || Sbjct 160001 TCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATATTTTT 159949 >seq78 Length=1009284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||||||| | ||| ||||| || | |||||| || | Sbjct 220265 CCACCACGCAGACGGAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAGTCTGCA 220324 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||||| || ||||||||||| | || || || | || Sbjct 220325 AGGGTGCGACCATCCTCCAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGA 220384 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| |||||| | ||| || || | ||| ||| || Sbjct 220385 ATCCCTTCCTTATCTTGGATCTTTGTTTTGACGTTATCAATAGTATC-CGAGCTCTCCAC 220443 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || || ||||||||||| || ||||| Sbjct 220444 CTCCAAGGTGATAGTTTTTCCAGTGAGGGTTTTCACAAATATCTGCAT 220491 >seq26 Length=1968749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| |||| |||||||| | || ||||| | | || ||| | || || Sbjct 78449 ACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTTCGTCCATCCTCA 78390 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||||| ||||| ||||| | ||| ||||| | || | ||||| || || | Sbjct 78389 AGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTATCCTGG 78330 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTT 43079 ||| |||| || | ||| || || | ||| | | || || | || || || || Sbjct 78329 ATCTTGGCTTTCACATTATCAATAGTATC-CGAGCTTTCCACCTCAAGGGTGATGGTCTT 78271 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||||||||||||||||||||| Sbjct 78270 GCCAGTGAGAGTTTTCACAAAAATTTGCAT 78241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381324910037670