Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq435 246 4e-60 seq549 154 2e-32 seq23 104 3e-17 seq14 104 3e-17 >seq435 Length=220439 Score = 246 bits (272), Expect = 4e-60 Identities = 418/599 (70%), Gaps = 10/599 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||| || || || || ||||||| || || ||||| || || || || Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || |||||||| ||||| ||||| ||||||||||| | | |||| | || || || || Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 104747 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATG 42240 || ||||| || ||||| || || | ||||| || ||| || | | ||| Sbjct 104748 TATCCCTTCCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTC--- 104804 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||||| | |||||| || |||||||| ||||| |||| ||| || ||||||| Sbjct 104805 TATCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATG 104864 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 ||| ||| ||| || ||| || ||| || | || || || | ||||||||| ||||| Sbjct 104865 AAACAGACGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACAT 104924 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 || || || || || ||||| || ||||| || ||||||||| | ||||| | || Sbjct 104925 CTCCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGAC 104984 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 || |||||| | || || | || | ||| ||| || ||||| ||| ||| || Sbjct 104985 TTGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGC 105044 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATC 42540 || || || | || || || || | ||| ||||| || || | || | ||| | Sbjct 105045 GAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTG 105104 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 | || |||| ||| | ||| || ||||| |||||||||| || ||||| ||||| || Sbjct 105105 ACGGAGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTT 105164 Query 42601 ATACATATTCCAGATATCAT-GATATTGAATTGGGAAAATAACAAATCTATTTGGATTT 42658 ||||| | |||||| | || |||||||||||||||| ||| |||| | ||| ||| Sbjct 105165 GTACATCTCCCAGAT-TGATGGATATTGAATTGGGAACATACAGAATCGGTCTGGGTTT 105222 >seq549 Length=172529 Score = 154 bits (170), Expect = 2e-32 Identities = 384/578 (66%), Gaps = 4/578 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||| || || || || ||||||| || || ||||| ||||| || || Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| | ||||||||||| | ||||||||| | | |||| | || || || || Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 30723 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 || ||||| || ||||| |||| || || || | ||| | || | | || Sbjct 30722 TATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACTCTCGCTCCCGTCAAT 30663 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||| ||||| |||||||| || || |||| |||||| || |||| ||| Sbjct 30662 CCACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAA 30603 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 || || || || | | ||| || | ||| || || | || |||||| ||||| || Sbjct 30602 CAGGCGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTC 30543 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || || || ||||| || ||||| |||||||| ||| | ||||| | || || Sbjct 30542 GGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTG 30483 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || ||| | || || | || | ||||||| || || || ||| ||| || || Sbjct 30482 GACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAA 30423 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 || || | ||||| || || | || ||||| || || | || | ||| | Sbjct 30422 GAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCG 30363 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 |||||| || | ||| || || || | |||||||| || || || || || || || Sbjct 30362 GATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTA 30303 Query 42604 CATATTCCAGATATCAT-GATATTGAATTGGGAAAATA 42640 ||| | |||||| | || | || ||||| ||||| ||| Sbjct 30302 CATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATA 30266 >seq23 Length=2045696 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 906677 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 906618 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || ||||| |||||| ||||||| || ||| || || Sbjct 906617 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 906558 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || ||| ||||| || || |||| ||| | || || || || |||||||| || Sbjct 906557 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 906498 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 || || ||||||||||| ||||| Sbjct 906497 TCCTTCAATACTATCATCTTTCATG 906473 >seq14 Length=2767599 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | || || | ||| | || ||||||||||||| || || Sbjct 700398 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCC 700457 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| ||||| ||||| |||||| ||||||| || ||| || Sbjct 700458 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 700517 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || ||| ||||| ||||| |||| ||| | || || || || |||||||| || Sbjct 700518 TACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATAT 700577 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 || || ||||||||||| ||||| Sbjct 700578 TCCTTCAATACTATCATCTTTCATG 700602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671058537457400