Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq189 100 3e-16 seq200 93.3 4e-14 >seq189 Length=529659 Score = 100 bits (110), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| ||||| |||||| | || | ||| ||||||||||| ||| Sbjct 461271 GTGGATTCCTTTTGGATGTTATAATCGGCAAGGGTACGGCCGTCCTCGAGTTGTTTGCCA 461212 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || | ||||| ||||||||||| ||||| || ||||||||||| ||||| ||| Sbjct 461211 GCGAAAATCAGGCGTTGCTGATCAGGAGGGATACCTTCTTTGTCTTGGATTTTGGCTTTG 461152 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | || ||||||| ||| | || ||||| |||| ||| Sbjct 461151 ACGTTGTCGATTGTATCAGAACTCTCGACTTCAAGAGTTATGGTTTTGCCTGTCAGGGTT 461092 Query 143168 TTTACGAATATTTGCATAGCTT 143189 || ||||| || ||||| |||| Sbjct 461091 TTCACGAAGATCTGCAT-GCTT 461071 >seq200 Length=492930 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/239 (69%), Gaps = 5/239 (2%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 143034 || || || | ||| ||||| || || |||||||| || | ||| | || | ||||| Sbjct 457262 ACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGTCCA-TCTTC 457320 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||||| || || | || ||||||||||| || || || |||||||| ||||| Sbjct 457321 TAGTTGTTTCCCGGCGAAAATAAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTG 457380 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||| ||| | | || | || || | | |||||| || | || | ||||| Sbjct 457381 GATTTTGGCTTTGACATTGTCGATTGTATCTGAAGATTCTACCTCGAGGGTTATGGTCTT 457440 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATG---TTTTACCTTCCTCTTATT 143210 || ||||| ||||| ||||| || ||||| ||| || | || | |||||||| || Sbjct 457441 CCCCGTCAAGGTTTTCACGAAGATCTGCATGTCTTCTGGTTTCTTGCTTTCCTCTTTTT 457499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506953463206800