Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_004302.1 Length=33350 Score E Sequences producing significant alignments: (Bits) Value seq2164 453 2e-123 >seq2164 Length=27727 Score = 453 bits (502), Expect = 2e-123 Identities = 427/544 (78%), Gaps = 0/544 (0%) Strand=Plus/Minus Query 29789 AATGAGTTTAGATAATTTCAAAAAGCAAACTATTACATGGGATATGATTAACCAGGCATT 29848 |||||||||||||||||| ||||| | | ||| |||||||| | | || | | || Sbjct 21269 AATGAGTTTAGATAATTTTAAAAATAGAGCGATTGTATGGGATACGGTCAATAAAGGCTT 21210 Query 29849 TGAACAGCCCATTCAAATTATGGAGGGAGATGTCAATGCAAGAACGCTACTTCTTAAGAT 29908 ||| || |||||||| ||| | || || ||||| || ||||| | |||| || Sbjct 21209 CCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAATTAAAAT 21150 Query 29909 AACTGATAATGGTTCTGTACTTGACTTAACAGGTTATTCAGTAAAATTAACCTATCAATA 29968 | ||||||||| | | |||| || || ||| ||||| ||||| | || |||||||| Sbjct 21149 ACTTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATA 21090 Query 29969 TATGTATAAATCTCAATCAGGTTTTATTATGTTAACTCCTAATGATATATCCAAGGGAGA 30028 || ||| | | ||||||||| ||||| | ||||| | | || | |||||||| Sbjct 21089 TACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAGGGAGA 21030 Query 30029 ATTCATGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCAAATTTAAT 30088 || || | |||||||||| || ||||||| | | ||| | || || | || ||||| Sbjct 21029 GTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCGAACTTAAT 20970 Query 30089 ACTTCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAGCATTCATATCAGA 30148 ||||||||||||||||||||| || ||||| ||||| ||||| | | || |||||||| Sbjct 20969 ACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTTATATCAGA 20910 Query 30149 TGATTCTACAGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 30208 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20909 TAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 20850 Query 30209 ATTATTATTGGAAAATATGCCACAAGTGATGCGTAGTGAGTTGAATGACTTACATGATCA 30268 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 20849 ATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTACATGCTCA 20790 Query 30269 AACCGATTCAAACAAGAGCAATATTGACCTTAAAGCAAATTTAGCTGATATGACGAGCTT 30328 ||| || |||||||||||||||||||| |||||||| ||| | | || ||| | ||| Sbjct 20789 AACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTGAACAACTT 20730 Query 30329 ACAA 30332 |||| Sbjct 20729 ACAA 20726 Score = 185 bits (204), Expect = 2e-42 Identities = 108/112 (96%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 30681 TTAATCACAAACAAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 30740 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20668 TTAATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 20609 Query 30741 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCAAACAGTTTACCAC 30792 |||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 20608 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTAACAC 20557 Score = 114 bits (126), Expect = 3e-21 Identities = 86/99 (87%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 31726 CATGGGAAAATATCGGTTCAGCAGTGATTGGTTCAACGACAATATATTATTGGAAACGAA 31785 ||||| ||||||||||||| | ||| ||||||||||| |||||||||||||||||||| | Sbjct 18882 CATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATATTATTGGAAACGCA 18823 Query 31786 CTGCATaaaaaataaaaaaTAGGAGAA-AGAACATGAAA 31823 ||||||||||||||||| |||| || | || |||||| Sbjct 18822 CTGCATAAAAAATAAAA---AGGAAAATAAAAAATGAAA 18787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106586228794560