Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq461 98.7 8e-16 seq26 91.5 1e-13 >seq461 Length=207379 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| ||||| ||| | || | || ||||||||||||||||| ||||||||| Sbjct 160637 CCTCCGCGCAGCCTTAGCACAAGATGAAGAGTTGACTCCTTTTGAATATTATAATCCGCC 160578 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || | || |||||||| || || ||| | || | ||||||||| || || Sbjct 160577 AGAGTCCTGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGG 160518 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||| || || || | | ||| || |||| |||| Sbjct 160517 ATCCCCTCCTTGTCCTGAATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 160458 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || |||| || || |||||||| ||||| Sbjct 160457 TCTAGCGTGATAGTCTTTCCGGTTAGGGTCTTCACAAAAATCTGCAT 160411 >seq26 Length=1968749 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| ||||| | | ||||| ||| | ||||||||||| ||||| ||||| || || Sbjct 78923 CCTCCACGCAAGCGCAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 78864 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||||||| || || ||| | ||||| ||||| ||||| ||| Sbjct 78863 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGGGGG 78804 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | |||||||||||| ||||| || || | ||| || | ||| |||| | Sbjct 78803 ATGCCCTCTTTGTCCTGGATTTTTGCCTTGACATTATCGATGGT---GTCAGAGCTCTCT 78747 Query 18994 --TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| || || || || ||||| || || ||||| ||||| Sbjct 78746 ACCTCCAAGGTAATAGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCAT 78697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414524219193310