Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq78 107 1e-18 seq663 86.0 4e-12 seq70 86.0 4e-12 seq189 82.4 5e-11 >seq78 Length=1009284 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGA-CGCTCATCGT 43970 ||||||||| || || || || |||||||| || || | || | || |||| | Sbjct 220282 CACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAGTC-TGCAAGGGTGCGACCATCCT 220340 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 ||| |||||||| ||||| ||||||| |||||||||| | || | ||||| |||||| Sbjct 220341 CCAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGAATCCCTTCCTTATCTT 220400 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 || ||| |||||| || ||| |||||| | |||||| || | || || |||| Sbjct 220401 GGATCTTTGTTTTGACGTTATCAATAGTATCCGAGCTCTCCACCTCCAAGGTGATAGTTT 220460 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || | || ||||||||||| ||||| Sbjct 220461 TTCCAGTGAGGGTTTTCACAAATATCTGCAT 220491 >seq663 Length=136023 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || |||||||| || ||||||||||||||| || || |||| || | ||| Sbjct 60221 TGGAGGGTGCTCTCCTTCTGAATATTATAATCGGCCAAAGTCCGACCATCTTCGAGCTGT 60280 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 ||||| || || ||||| ||||| || ||| | || | || || |||||| ||| || Sbjct 60281 TTTCCGGCGAAGATCAAACGTTGTTGATCCGGCGGGATGCCCTCCTTATCTTGAATCTTG 60340 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCG-GCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||||| | | | || || || | |||||| || | ||||| || || || || Sbjct 60341 GCCTTGACGTTGTCGATGGTGTC-GCTGCTCTCCACCTCTAGGGTAATGGTCTTCCCTGT 60399 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 || ||||| |||||||| ||||| Sbjct 60400 CAAGGTCTTAACAAATATCTGCAT 60423 >seq70 Length=1087276 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970 ||||||||| || ||| ||| || || || || ||||| | | || ||| |||| | Sbjct 269269 CACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTG-CGCCCATCCT 269211 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | ||| || || ||||| || | || || ||||| |||| | || ||||||||| Sbjct 269210 CGAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGAGGGATGCCCTCTTTATCTT 269151 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||||| ||||| || ||| || || | |||||| || | || || || | Sbjct 269150 GGATTTTAGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCT 269091 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || |||||||||||||| |||||||| Sbjct 269090 TCCCAGTCAAAGTCTTCACAAAAATTTGCAT 269060 >seq189 Length=529659 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | | |||| ||| || || ||| |||||||| |||||||| Sbjct 461757 CCGCCTCTCAAACGCAGTACCAGATGCAGAGTAGACTCCTTTTGAATGTTATAATCCGCA 461698 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | | || ||||| || || |||||||| || | || ||||| ||| | || Sbjct 461697 AGAGTCCTCCCCTCTTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGGGGA 461638 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || || ||| || ||| || || ||| ||||| | || || Sbjct 461637 ATCCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTATCAATTGTATCAGAGCTTTCAACC 461578 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||| ||||| || || ||||||||||| || || ||||||||| Sbjct 461577 TCAAGCGTGATTGTCTTTCCAGTTAAAGTCTTAACGAAGATTTGCATG 461530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354736026163020