Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_005822.1 Length=32172 Score E Sequences producing significant alignments: (Bits) Value seq2164 468 1e-127 >seq2164 Length=27727 Score = 468 bits (518), Expect = 1e-127 Identities = 430/544 (79%), Gaps = 0/544 (0%) Strand=Plus/Minus Query 27200 AATGAGTTTAGATAATTTTAAAAAGCAAACTATTACATGGGATATGATTAACCAGGCATT 27259 |||||||||||||||||||||||| | | ||| |||||||| | | || | | || Sbjct 21269 AATGAGTTTAGATAATTTTAAAAATAGAGCGATTGTATGGGATACGGTCAATAAAGGCTT 21210 Query 27260 TGAACAGCCCATTCAAATTATGGAGGGAGATGTCAATGCAAGAACGCTACTTCTTAAGAT 27319 ||| || |||||||| ||| | || || ||||| || ||||| | |||| || Sbjct 21209 CCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAATTAAAAT 21150 Query 27320 AACTGATAATGGTTCTGTACTTGACTTAACAGGTTATTCAGTAAAATTAACCTATCAATA 27379 | ||||||||| | | |||| || || ||| ||||| ||||| | || |||||||| Sbjct 21149 ACTTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATA 21090 Query 27380 TATGTATAAATCTCAATCAGGTTTTATTATGTTAACTCCTAATGATATATCCAAGGGAGA 27439 || ||| | | ||||||||| ||||| | ||||| | | || | |||||||| Sbjct 21089 TACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAGGGAGA 21030 Query 27440 ATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCAAATTTAAT 27499 || | | |||||||||| || ||||||| | | ||| | || || | || ||||| Sbjct 21029 GTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCGAACTTAAT 20970 Query 27500 ACTTCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAACATTTATATCAGA 27559 ||||||||||||||||||||| || ||||| ||||| ||||| | || ||||||||||| Sbjct 20969 ACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTTATATCAGA 20910 Query 27560 TGATTCTACAGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 27619 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20909 TAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 20850 Query 27620 ATTATTATTGGAAAACATGCCACAAGTTATGCGTAGTGAGTTGAATGATTTACATGCTCA 27679 ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 20849 ATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTACATGCTCA 20790 Query 27680 AACTGAATCAAACAAGAGCAATATTGAACTTAAAGCAAATTTAGCTGATATGACTAGCTT 27739 ||||||||||||||||||||||||||| |||||||| ||| | | || ||| | ||| Sbjct 20789 AACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAATCAAACAGACTTGAACAACTT 20730 Query 27740 ACAA 27743 |||| Sbjct 20729 ACAA 20726 Score = 190 bits (210), Expect = 4e-44 Identities = 108/110 (98%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 28094 AATCACAAATAAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAAGC 28153 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20666 AATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAAGC 20607 Query 28154 CAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTACCAC 28203 |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 20606 CAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTAACAC 20557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102817059200420