Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq461 118 9e-22 seq663 96.9 3e-15 seq41 86.0 5e-12 seq137 82.4 6e-11 >seq461 Length=207379 Score = 118 bits (130), Expect = 9e-22 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||||||||||| ||||| |||||||| ||||| ||| | || |||||||| Sbjct 160158 ATGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCCAGCTG 160099 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || ||| || | |||| |||||| |||||| || | | ||||||||| ||| || Sbjct 160098 TTTTCCGGCGAAGATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTCTTGAATCTT 160039 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| ||| | |||| ||| | || ||||| || ||| Sbjct 160038 GGCCTTGACGTTGTCG--ATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCG 159981 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| |||||||| || |||||||| Sbjct 159980 GTGAGGGTTTTCACGAAGATCTGCAT 159955 Score = 102 bits (112), Expect = 7e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||||| ||||| ||| | |||||| || |||||||||||| || ||||| ||| Sbjct 160637 CCTCCGCGCAGCCTTAGCACAAGATGAAGAGTTGACTCCTTTTGAATATTATAATCCGCC 160578 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | | || | || ||||||||||| || | | || || | |||||| || || Sbjct 160577 AGAGTCCTGC-CATCTTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCTGGTGG 160519 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||||||| ||| || ||||| | | || ||||| ||| | |||| Sbjct 160518 GATCCCCTCCTTGTCCTGAATCTTTGCCTTGACGTTGTCG--ATGGTGTCGCTGCTCTCC 160461 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || || || ||||| || || |||||||||||||||||| Sbjct 160460 ACCTCTAGCGTGATAGTCTTTCCGGTTAGGGTCTTCACAAAAATCTGCATC 160410 >seq663 Length=136023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||||||||||| ||||| |||||||| |||| || | || || ||||| Sbjct 60449 TGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGCCAGAGTCCGACCATCTTCTAGCTGT 60508 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || ||||| || |||||| ||| | | |||||||| ||| || Sbjct 60509 TTTCCGGCGAAGATCAAACGTTGTTGATCCGGCGGGATGCCCTCCTTGTCTTGAATCTTG 60568 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 |||| | | || ||||| ||| | |||| ||| | ||||| || || |||| Sbjct 60569 GCTTTGACGTTGTCG--ATGGTGTCGCTGCTCTCCACCTCAAGGGTTATAGTCTTGCCGG 60626 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | ||||||||||| || ||||||||| Sbjct 60627 TCAGAGTTTTCACGAAGATCTGCATC 60652 >seq41 Length=1573182 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||| |||||| || ||||||||||||| ||| || || | |||| Sbjct 840446 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAG-CAAGGGTGCGGCCATCCT 840504 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | | || || | |||||| || || | | |||||||||| Sbjct 840505 CCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCT 840564 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | |||||||| | | |||| ||| | || ||||| | Sbjct 840565 GGATCTTAGCCTTGACATTGTCGATGGTATCAGAACTCTCCACCTCCAAGGTGATGGTCT 840624 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || || ||||| || ||||| Sbjct 840625 TTCCAGTAAGGGTCTTAACAAAGATTTGCAT 840655 >seq137 Length=652956 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 |||| || || ||||||||||| || || || | || ||||||||||| || | | Sbjct 513289 CCTTCTGGATATTGTAATCAGC-AAGGGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAG 513231 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | | ||||||||| || | | |||||||||| ||||| |||| | Sbjct 513230 ATCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTTGTCCTGGATTTTGGCTTTGACATTG 513171 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || ||||| |||| || ||| | |||||||| || || || || ||||||||| Sbjct 513170 TCAATAGTATCACTAGATTCGACCTCAAGAGTTATGGTCTTGCCAGTCAGGGTTTTCACA 513111 Query 48716 AAAATCTGCATCGTGTC 48732 || ||||||||| |||| Sbjct 513110 AAGATCTGCATCCTGTC 513094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421201836599615