Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq310 114 7e-21
seq73 114 7e-21
seq44 113 2e-20
seq85 111 8e-20
seq3 111 8e-20
seq21 109 3e-19
seq242 107 1e-18
seq92 107 1e-18
seq86 107 1e-18
seq165 105 3e-18
seq12 105 3e-18
seq117 104 1e-17
seq23 104 1e-17
seq1 104 1e-17
seq194 95.1 6e-15
seq4 95.1 6e-15
seq19 91.5 8e-14
>seq310
Length=316698
Score = 114 bits (126), Expect = 7e-21
Identities = 80/91 (88%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 11441 AATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|||||||| ||| ||||||||||| | | |||||||| |||||||||||||||||||
Sbjct 226549 AATAAAAATATTCAGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 226490
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||| |||||| ||||||||||||||||||||
Sbjct 226489 ACGGCGCTCTAACCAACTGAGCTAATGGGCC 226459
>seq73
Length=1038720
Score = 114 bits (126), Expect = 7e-21
Identities = 76/85 (89%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||| ||||| ||||||||| | | |||||||| |||||||||||||||||||||||||
Sbjct 998032 AAAATTCAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 998091
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||| ||||
Sbjct 998092 CTCTAACCAACTGAGCTAATAGGCC 998116
>seq44
Length=1496881
Score = 113 bits (124), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||| |||| || | ||||||||| | | |||||||| |||||||||||||||||||||
Sbjct 762053 AATACAAAAACAGAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 761994
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||| ||||
Sbjct 761993 GACGCTCTAACCAACTGAGCTAATAGGCC 761965
>seq85
Length=956722
Score = 111 bits (122), Expect = 8e-20
Identities = 78/89 (88%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 11446 AAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| |||| ||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 770073 AAAAACAAAGGGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 770132
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTC 11532
||||| ||||||||||||||| |||||||
Sbjct 770133 GCTCTAACCAACTGAGCTAATAGGCCGTC 770161
>seq3
Length=6055380
Score = 111 bits (122), Expect = 8e-20
Identities = 86/101 (85%), Gaps = 4/101 (4%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
|| |||| || ||||||||| ||||||||||| | | |||||||| |||||||||
Sbjct 3293617 AATTATA-AAGTAATAAAAATG---ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCG 3293672
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||| ||||||||||||||| ||||
Sbjct 3293673 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 3293713
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 3497056 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3496997
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 3496996 TGAGCTAATAGGCC 3496983
>seq21
Length=2098779
Score = 109 bits (120), Expect = 3e-19
Identities = 80/93 (86%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496
||| || |||||| ||| ||||||||| | | |||||||| |||||||||||||||||
Sbjct 533301 AATAAAAAAAAAAACAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTA 533244
Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||| |||||||| ||||||||||||||| ||||
Sbjct 533243 GCAAGACGCTCTAACCAACTGAGCTAATAGGCC 533211
>seq242
Length=400223
Score = 107 bits (118), Expect = 1e-18
Identities = 79/90 (88%), Gaps = 2/90 (2%)
Strand=Plus/Minus
Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
|||| ||||| ||||| |||||||| | | |||||||| ||||||||||||||||||||
Sbjct 380746 TAATGAAAAA-CAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 380689
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||| ||||| ||||||||||||||| ||||
Sbjct 380688 CGAAGCTCTAACCAACTGAGCTAATAGGCC 380659
>seq92
Length=894739
Score = 107 bits (118), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||||||||||||| | | |||||||| |||||||||||||||||||| |||||||| ||
Sbjct 315613 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCATGACGCTCTAAC 315672
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 315673 CAACTGAGCTAATAGGCC 315690
>seq86
Length=952483
Score = 107 bits (118), Expect = 1e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 387649 ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 387708
Query 11514 ACTGAGCTAATGGGCC 11529
||||||||||| ||||
Sbjct 387709 ACTGAGCTAATAGGCC 387724
>seq165
Length=597593
Score = 105 bits (116), Expect = 3e-18
Identities = 74/85 (87%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| ||| ||||||||| | | |||||||| || ||||||||||||||||||||||
Sbjct 395862 AAAAAGTAAAATGGCCCATGCAGGTTTCGAACCTGCGCCCTTCGCGTTATTAGCACGACG 395921
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||| ||||
Sbjct 395922 CTCTAACCAACTGAGCTAATAGGCC 395946
>seq12
Length=3070725
Score = 105 bits (116), Expect = 3e-18
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 648224 AAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 648283
Query 11513 AACTGAGCTAATGGGCC 11529
|||||||||||| ||||
Sbjct 648284 AACTGAGCTAATAGGCC 648300
>seq117
Length=762408
Score = 104 bits (114), Expect = 1e-17
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| ||||| |||||||| | | |||||||| |||||||| |||||||||||||||
Sbjct 289543 AAAAAAACAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCTCGTTATTAGCACGAC 289601
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||| ||||
Sbjct 289602 GCTCTAACCAGCTGAGCTAATAGGCC 289627
>seq23
Length=2045696
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 209637 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 209696
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 209697 TGAGCTAATAGGCC 209710
>seq1
Length=8759900
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 5092134 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5092193
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 5092194 TGAGCTAATAGGCC 5092207
>seq194
Length=514805
Score = 95.1 bits (104), Expect = 6e-15
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||| ||||||| |||| |
Sbjct 307768 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACCACGCTCTAACCAGC 307709
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 307708 TGAGCTAATAGGCC 307695
>seq4
Length=5529634
Score = 95.1 bits (104), Expect = 6e-15
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||| || | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1966827 TGGCCCTTGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1966768
Query 11516 TGAGCTAATGGGCC 11529
|||||||| ||||
Sbjct 1966767 TGAGCTAAAAGGCC 1966754
>seq19
Length=2214699
Score = 91.5 bits (100), Expect = 8e-14
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||| | | ||| ||
Sbjct 1995941 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGTTGTAACCTAC 1995882
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 1995881 TGAGCTAATAGGCC 1995868
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261460557725740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |