Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq310 114 7e-21 seq73 114 7e-21 seq44 113 2e-20 seq85 111 8e-20 seq3 111 8e-20 seq21 109 3e-19 seq242 107 1e-18 seq92 107 1e-18 seq86 107 1e-18 seq165 105 3e-18 seq12 105 3e-18 seq117 104 1e-17 seq23 104 1e-17 seq1 104 1e-17 seq194 95.1 6e-15 seq4 95.1 6e-15 seq19 91.5 8e-14 >seq310 Length=316698 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAA--TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||||| ||| ||||||||||| | | |||||||| ||||||||||||||||||| Sbjct 226549 AATAAAAATATTCAGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 226490 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||| |||||||||||||||||||| Sbjct 226489 ACGGCGCTCTAACCAACTGAGCTAATGGGCC 226459 >seq73 Length=1038720 Score = 114 bits (126), Expect = 7e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| ||||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 998032 AAAATTCAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 998091 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 998092 CTCTAACCAACTGAGCTAATAGGCC 998116 >seq44 Length=1496881 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| || | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 762053 AATACAAAAACAGAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 761994 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 761993 GACGCTCTAACCAACTGAGCTAATAGGCC 761965 >seq85 Length=956722 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11446 AAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| |||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 770073 AAAAACAAAGGGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 770132 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||| ||||||||||||||| ||||||| Sbjct 770133 GCTCTAACCAACTGAGCTAATAGGCCGTC 770161 >seq3 Length=6055380 Score = 111 bits (122), Expect = 8e-20 Identities = 86/101 (85%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || |||| || ||||||||| ||||||||||| | | |||||||| ||||||||| Sbjct 3293617 AATTATA-AAGTAATAAAAATG---ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCG 3293672 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 3293673 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 3293713 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3497056 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3496997 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3496996 TGAGCTAATAGGCC 3496983 >seq21 Length=2098779 Score = 109 bits (120), Expect = 3e-19 Identities = 80/93 (86%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || |||||| ||| ||||||||| | | |||||||| ||||||||||||||||| Sbjct 533301 AATAAAAAAAAAAACAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTA 533244 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||| ||||||||||||||| |||| Sbjct 533243 GCAAGACGCTCTAACCAACTGAGCTAATAGGCC 533211 >seq242 Length=400223 Score = 107 bits (118), Expect = 1e-18 Identities = 79/90 (88%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| ||||| ||||| |||||||| | | |||||||| |||||||||||||||||||| Sbjct 380746 TAATGAAAAA-CAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 380689 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||| ||||||||||||||| |||| Sbjct 380688 CGAAGCTCTAACCAACTGAGCTAATAGGCC 380659 >seq92 Length=894739 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| |||||||||||||||||||| |||||||| || Sbjct 315613 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCATGACGCTCTAAC 315672 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 315673 CAACTGAGCTAATAGGCC 315690 >seq86 Length=952483 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 387649 ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 387708 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 387709 ACTGAGCTAATAGGCC 387724 >seq165 Length=597593 Score = 105 bits (116), Expect = 3e-18 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| || |||||||||||||||||||||| Sbjct 395862 AAAAAGTAAAATGGCCCATGCAGGTTTCGAACCTGCGCCCTTCGCGTTATTAGCACGACG 395921 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 395922 CTCTAACCAACTGAGCTAATAGGCC 395946 >seq12 Length=3070725 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 648224 AAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 648283 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 648284 AACTGAGCTAATAGGCC 648300 >seq117 Length=762408 Score = 104 bits (114), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||||| |||||||| | | |||||||| |||||||| ||||||||||||||| Sbjct 289543 AAAAAAACAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCTCGTTATTAGCACGAC 289601 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 289602 GCTCTAACCAGCTGAGCTAATAGGCC 289627 >seq23 Length=2045696 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 209637 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 209696 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 209697 TGAGCTAATAGGCC 209710 >seq1 Length=8759900 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5092134 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5092193 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 5092194 TGAGCTAATAGGCC 5092207 >seq194 Length=514805 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||| ||||||| |||| | Sbjct 307768 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACCACGCTCTAACCAGC 307709 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 307708 TGAGCTAATAGGCC 307695 >seq4 Length=5529634 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1966827 TGGCCCTTGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1966768 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 1966767 TGAGCTAAAAGGCC 1966754 >seq19 Length=2214699 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||| | | ||| || Sbjct 1995941 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGTTGTAACCTAC 1995882 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1995881 TGAGCTAATAGGCC 1995868 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261460557725740