Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq9615 545 7e-151 seq223 545 7e-151 seq218 224 3e-54 seq421 190 6e-44 >seq9615 Length=156766 Score = 545 bits (604), Expect = 7e-151 Identities = 718/987 (73%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| |||||| | || |||||||| || | Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||||||| ||| | | || ||| || ||||| |||| || || || || || Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 1212 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || ||||| || ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 1211 CCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1152 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || |||||||| || | |||| | || || ||||| |||||||||| || || Sbjct 1151 ATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATA 1092 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||| |||||||||||||||||||| ||| | || |||| Sbjct 1091 TGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 1033 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| || | |||||||||| || | | Sbjct 1032 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTGAGTTTCCG 973 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || |||||| |||| || | | || ||| ||| Sbjct 972 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGC 913 Query 19709 TGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | |||| ||| | || ||||| |||||| ||||| |||||||| || | Sbjct 912 TGT-TTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAA 854 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||||||||||||||||||||| | |||||||| || || ||||| ||||||||||| | Sbjct 853 TCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 794 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | || |||||| | || || ||||| |||||||| || || || ||| ||||||||| | Sbjct 793 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 734 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | |||||| || || | |||| |||||| || || ||| ||| || | | Sbjct 733 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 674 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | || || ||||| ||||| || |||||||| || || || || || || |||| Sbjct 673 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 614 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || ||||||||| ||| || || ||||| |||||||||||||| | | Sbjct 613 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGCTCTTTACATTTCTTCTTAG 554 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| | || | | || || ||||||||||||||| Sbjct 553 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 494 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCA 20186 | || |||||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 493 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAAT 435 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | || | |||||||| || | ||||||||||| || || ||| Sbjct 434 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 375 Query 20247 GCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||| ||||| || || ||||| Sbjct 374 GCTCATAATTTCCCTCTAGACCTAGCT 348 >seq223 Length=428319 Score = 545 bits (604), Expect = 7e-151 Identities = 718/987 (73%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| |||||| | || |||||||| || | Sbjct 58735 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 58794 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||||||| ||| | | || ||| || ||||| |||| || || || || || Sbjct 58795 ATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 58854 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || ||||| || ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 58855 CCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 58914 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || |||||||| || | |||| | || || ||||| |||||||||| || || Sbjct 58915 ATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATA 58974 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 ||||||| ||||| | | ||||| |||||||||||||||||||| ||| | || |||| Sbjct 58975 TGGGAAG-CGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 59033 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| || | |||||||||| || | | Sbjct 59034 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTGAGTTTCCG 59093 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || |||||| |||| || | | || ||| ||| Sbjct 59094 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGC 59153 Query 19709 TGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | |||| ||| | || ||||| |||||| ||||| |||||||| || | Sbjct 59154 TGT-TTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAA 59212 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||||||||||||||||||||| | |||||||| || || ||||| ||||||||||| | Sbjct 59213 TCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 59272 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | || |||||| | || || ||||| |||||||| || || || ||| ||||||||| | Sbjct 59273 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 59332 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | |||||| || || | |||| |||||| || || ||| ||| || | | Sbjct 59333 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 59392 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | || || ||||| ||||| || |||||||| || || || || || || |||| Sbjct 59393 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 59452 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || ||||||||| ||| || || ||||| |||||||||||||| | | Sbjct 59453 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGCTCTTTACATTTCTTCTTAG 59512 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| | || | | || || ||||||||||||||| Sbjct 59513 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 59572 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCA 20186 | || |||||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 59573 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAAT 59631 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | || | |||||||| || | ||||||||||| || || ||| Sbjct 59632 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 59691 Query 20247 GCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||| ||||| || || ||||| Sbjct 59692 GCTCATAATTTCCCTCTAGACCTAGCT 59718 >seq218 Length=447883 Score = 224 bits (248), Expect = 3e-54 Identities = 367/523 (70%), Gaps = 22/523 (4%) Strand=Plus/Minus Query 19332 GGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTC 19391 || |||||||| || | ||||||||| ||| | | || ||| || ||||| || Sbjct 92962 GGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 92903 Query 19392 GCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 19451 || || || || || || || ||||| || ||||| || ||||| || |||| || | Sbjct 92902 GCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTCTTTCTGGAT-- 92845 Query 19452 TTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGA 19511 | ||| || ||||||||||| |||||||| || | |||| | || || ||||| Sbjct 92844 TAAATTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGG 92785 Query 19512 CTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGG 19570 |||||||||| || || |||||||| |||| | | ||||| ||||||||||||||||| Sbjct 92784 TTGCACTTTTACCCAATATGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGCGG 92726 Query 19571 TCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACA 19630 ||| ||| | || |||| | ||||||||| | || ||||| ||| || | | Sbjct 92725 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGA 92666 Query 19631 GTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACC 19690 ||||||||| || | | | || ||| | || ||||| || |||||| |||| || Sbjct 92665 GTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 92606 Query 19691 ACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTG 19749 | | || ||| |||||| ||||| | |||| ||| | || ||||| |||||| | Sbjct 92605 TGTTGCGGCGGCTACTGCTGT-TTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGG 92547 Query 19750 ATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 19809 ||||| || ||||||||||| ||||||||| |||||| || || | Sbjct 92546 ATGGT---CC--------AGTCTGGTACTTTGAACTTTATG-----ATTCCAGGCTGAGC 92503 Query 19810 ACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGG 19852 |||| ||||||||||| || || ||||| | || || ||||| Sbjct 92502 ACAACATCCTTATGCACCCATTTCACATCTTAGGCGTAGCTGG 92460 Score = 224 bits (248), Expect = 3e-54 Identities = 367/523 (70%), Gaps = 22/523 (4%) Strand=Plus/Minus Query 19332 GGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTC 19391 || |||||||| || | ||||||||| ||| | | || ||| || ||||| || Sbjct 367025 GGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 366966 Query 19392 GCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCG 19451 || || || || || || || ||||| || ||||| || ||||| || |||| || | Sbjct 366965 GCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTCTTTCTGGAT-- 366908 Query 19452 TTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGA 19511 | ||| || ||||||||||| |||||||| || | |||| | || || ||||| Sbjct 366907 TAAATTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGG 366848 Query 19512 CTGCACTTTTATCCGATCTGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGG 19570 |||||||||| || || |||||||| |||| | | ||||| ||||||||||||||||| Sbjct 366847 TTGCACTTTTACCCAATATGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGCGG 366789 Query 19571 TCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACA 19630 ||| ||| | || |||| | ||||||||| | || ||||| ||| || | | Sbjct 366788 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGA 366729 Query 19631 GTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACC 19690 ||||||||| || | | | || ||| | || ||||| || |||||| |||| || Sbjct 366728 GTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 366669 Query 19691 ACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTG 19749 | | || ||| |||||| ||||| | |||| ||| | || ||||| |||||| | Sbjct 366668 TGTTGCGGCGGCTACTGCTGT-TTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGG 366610 Query 19750 ATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 19809 ||||| || ||||||||||| ||||||||| |||||| || || | Sbjct 366609 ATGGT---CC--------AGTCTGGTACTTTGAACTTTATG-----ATTCCAGGCTGAGC 366566 Query 19810 ACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGG 19852 |||| ||||||||||| || || ||||| | || || ||||| Sbjct 366565 ACAACATCCTTATGCACCCATTTCACATCTTAGGCGTAGCTGG 366523 >seq421 Length=230418 Score = 190 bits (210), Expect = 6e-44 Identities = 313/446 (70%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 19830 TTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGA 19889 || |||||| | || || ||||| |||||||| || | || || || |||||| || Sbjct 19671 TTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTTCCTATTTAATGTTATGCATGGT 19612 Query 19890 AGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGC 19949 |||||| || || | |||| |||||| || || ||| ||| || | || Sbjct 19611 TCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 19552 Query 19950 TATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 20009 || | || || ||||| ||| | || |||||||| | || | || || || ||||| Sbjct 19551 TACAGATTTGGTCAAGAGGAAAAAACTTATAATATCATAGCCACTCATGGTTATTTTGGT 19492 Query 20010 AGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCT 20069 |||||| || ||||||||| ||| || || ||||| |||||||||||||| | ||| Sbjct 19491 CAATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGCTCTTTACATTTCTTCTTAGCT 19432 Query 20070 ACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAAC 20129 ||| || || || || || | | | | | | || || ||||||| |||||||| Sbjct 19431 GCTTGGCCTGTAGTAGGTATCTAGTTCATTGCTTTAGGTATTAGCACTATAGCTTTCAAT 19372 Query 20130 CTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAAC 20188 || |||||||| | || ||||| | ||||||||| ||||| || |||| || Sbjct 19371 CTAAATGGTTTCGATTTCAACCAATTTGTAGTTGATAGTCAA-GGTTGTGTAATTAATAC 19313 Query 20189 ATGGGCTGAT-GTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 ||||||||| |||||| | | |||||||| || | ||| ||||||| || || |||| Sbjct 19312 CTGGGCTGATATTATTAACT-GTGCTAACCTTGGTATGGAAATTATGCATGAACGTAATG 19254 Query 20248 CTCATAACTTCCCACTTGATTTAGCT 20273 ||||||| ||||| || || ||||| Sbjct 19253 CTCATAATTTCCCTCTAGACCTAGCT 19228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144425107928940