Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq435 93.3 4e-14 seq549 86.0 7e-12 >seq435 Length=220439 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||| || | |||||||| ||||| ||||||||||| |||| ||| ||||| | Sbjct 104338 TTTTGATACTCCCCGACTCTTTTCTCGAAGAAATTTGTCTTCCCTTGCAAGGATATCAAC 104397 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| ||||||||||||| | || | | || || || || | || Sbjct 104398 TCCATCCAATCAAATGGATTAGCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAAC 104457 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAA 21363 | ||||| |||||||| || ||||| |||| ||| ||||| | |||||| || | ||| Sbjct 104458 AGCCTATCAGCTACAAACTCAATATACTGACTCATCAATTCCCCATTCATCCCCACCAA 104516 >seq549 Length=172529 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || || ||||||||||| | |||||||| | || || || || ||||| |||| Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAA 21594 || ||||| || || | |||||||||||||||||| | | |||| || || || || || Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 30723 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTA 21623 || || || ||| |||||| ||||||| Sbjct 30722 TATCCCTTCCACGCAAGCAAAAGCAACTA 30694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531836872172600