Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq435 226 4e-54 seq549 150 2e-31 seq14 104 3e-17 seq23 95.1 2e-14 seq131 84.2 3e-11 >seq435 Length=220439 Score = 226 bits (250), Expect = 4e-54 Identities = 419/612 (68%), Gaps = 2/612 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || |||||||| || || || || || |||| || | ||||| || || || || Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || |||||||| ||||| ||||| ||||||||||| | | || || || || || Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 104748 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33483 || ||||| || |||||| || || | ||||| || ||| ||| | | |||| Sbjct 104749 ATCCCTTCCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTCTATC 104808 Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543 ||| | |||||| || |||||||| ||||| |||| ||| || ||||||| ||| Sbjct 104809 CACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAAC 104868 Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 ||| ||| || ||| || ||| || | || || || | ||||||||| ||||| ||| Sbjct 104869 AGACGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCC 104928 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 || || || || ||||| || ||||| || ||||||||| | ||||| | | || Sbjct 104929 GAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGG 104988 Query 33664 ACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 |||||| | || || | || | ||| || || ||||| ||| ||| || || Sbjct 104989 ACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGAAG 105048 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33783 || || | || || || || | ||| ||||| || || || || | ||| | | | Sbjct 105049 AAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACGG 105108 Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33843 | |||| ||| | ||| || ||||| | |||||||| || || || ||||| || ||| Sbjct 105109 AGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTTGTAC 105168 Query 33844 ATGTTCCAGATGTCAT-AATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 33902 || | |||||| | || |||||| |||||||| ||| |||| | ||| ||| || Sbjct 105169 ATCTCCCAGAT-TGATGGATATTGAATTGGGAACATACAGAATCGGTCTGGGTTTTCAGC 105227 Query 33903 AAGGATGGGTTC 33914 |||| ||| || Sbjct 105228 GAGGAGGGGCTC 105239 >seq549 Length=172529 Score = 150 bits (166), Expect = 2e-31 Identities = 402/612 (66%), Gaps = 2/612 (0%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || |||||||| || || || || || |||| || | ||||| ||||| || || Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| | ||||||||||| | ||||||||| | | || || || || || Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 30722 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC 33483 || ||||| || |||||| |||| || || || | ||| |||| | | ||| Sbjct 30721 ATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACTCTCGCTCCCGTCAATC 30662 Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543 ||| ||||| |||||||| || || |||| |||||| || |||| ||| Sbjct 30661 CACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAAC 30602 Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 || || || || | | ||| || | |||||| || | || |||||| ||||| || Sbjct 30601 AGGCGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCG 30542 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 || || || || ||||| || ||||| |||||||| ||| | ||||| | | || Sbjct 30541 GAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGG 30482 Query 33664 ACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 || ||| | || || | || | |||||| || || || ||| ||| || || Sbjct 30481 ACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAG 30422 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33783 || || | ||||| || || | || ||||| || || || || | ||| | | Sbjct 30421 AAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCGG 30362 Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33843 ||||| || | ||| || || || | |||||||| || ||||| || || || ||| Sbjct 30361 ATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTAC 30302 Query 33844 ATGTTCCAGATGTCAT-AATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 33902 || | |||||| | || || || || ||||| ||| || | | ||| ||| || Sbjct 30301 ATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATACAGAACCGGTCTGGGTTTTCAGC 30243 Query 33903 AAGGATGGGTTC 33914 |||| |||||| Sbjct 30242 CAGGAGGGGTTC 30231 >seq14 Length=2767599 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | ||| |||||||| || || |||||| | ||| | | || | Sbjct 700777 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCAAATGG 700836 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 ||||| | |||||||| || ||||| || |||||||| || || || | ||| | | Sbjct 700837 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 700896 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||||||||| ||||| || | ||| | | |||| | ||||||| |||| | Sbjct 700897 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAGGATCTTTCAAGC 700956 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846 || || || ||||| || | || |||||| || || || || || | |||| Sbjct 700957 GTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 701011 Score = 82.4 bits (90), Expect = 1e-10 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | || || | ||| | || ||||||||||||| || || Sbjct 700398 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCC 700457 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || ||||| |||||| ||||||| || || || Sbjct 700458 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 700517 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 || ||| ||||| ||||| |||| ||| | || || || || || ||||| || Sbjct 700518 TACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATAT 700577 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 || || || |||||||| ||||| Sbjct 700578 TCCTTCAATACTATCATCTTTCATG 700602 >seq23 Length=2045696 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | ||| |||||||| || || |||||| | ||| | | || | Sbjct 906309 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGTGTGAACCATCGCTGAGACATCAAATGG 906250 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || | | || | || ||||| || |||||||| || || || | ||||| | Sbjct 906249 TATGTTTTGAGTGCCAAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATTAGC 906190 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||||||||| ||||| || | ||| | | |||| || ||||||| |||| | Sbjct 906189 ATGTGCTGAGGCCTTTCCACAACCTTCCCTTGGACCTTCAGCAGGTAGGATCTTTCAAGG 906130 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846 || || || ||||| || | ||| |||||| || || || || || | |||| Sbjct 906129 GTCTTGAAGCCAAAGTAATCGTAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 906075 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 906677 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 906618 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || ||||| |||||| ||||||| || || || || Sbjct 906617 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 906558 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 || ||| ||||| || || |||| ||| | || || || || || ||||| || Sbjct 906557 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 906498 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 || || || |||||||| ||||| Sbjct 906497 TCCTTCAATACTATCATCTTTCATG 906473 >seq131 Length=684295 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 63111 TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 |||||||| || | ||||||| | ||| || || | ||||||| ||| |||| || Sbjct 385980 TCTCTTTCATACTGGGTATACAGTTTTTCAAATTCTTGTCCCCAACAATTAGCCAAACCT 385921 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC-CTTC--ACTCGTTTCATA 63227 ||| ||| || || | ||| ||||| | |||||| | || |||| || ||| Sbjct 385920 GGAGCCTCACTAGGGCAAAACAAAGACCATTT---GTCATCACCTCGAACTCTTTCCATG 385864 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280 ||||||||||||||||||||||| | |||| |||| | || |||||| || Sbjct 385863 AAGAGATCAGGAATCCAAAGAGCAAGGAATAAGTCTCGAGCTCGATGTTCTTC 385811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622872329533400