Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq435 91.5 4e-13 seq131 87.8 5e-12 >seq435 Length=220439 Score = 91.5 bits (100), Expect = 4e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 22765 GGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATT 22824 || || |||| |||| |||||| |||||| | ||||| || ||| | || || | Sbjct 104510 GGGATGAATGGGGAATTGATGAGTCAGTATATTGAGTTTGTAGCTGATAGGCTGTTGGGT 104451 Query 22825 TCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATT 22884 | || || | | ||| || || || | |||||||||||| |||||||| | || Sbjct 104450 GCGCTTGGGTGCGGGAAGGTGTACAATGTGGCTAATCCATTTGATTGGATGGAGTTGATA 104391 Query 22885 TCACTTG-AAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 || |||| |||| ||||| ||||||||||| |||||||| || || || ||||| || Sbjct 104390 TC-CTTGCAAGGGAAGACAAATTTCTTCGAGAAAAGAGTCGGGGAGTATCAAAAGGC 104335 >seq131 Length=684295 Score = 87.8 bits (96), Expect = 5e-12 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 ||||||||| || ||||| || || ||| | || || | ||| || || ||| | Sbjct 385029 TTGCTTTCTCCTGTGCATGAAAGATGACAGCATTGGAGGCATATATGATACTCTGAAGGA 385088 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| ||||| ||| || || ||||||||| | | | || ||| | | || Sbjct 385089 GTGTGCTGTTATTAGCAAATTAGCTGGAGGAATTGGTATTGCTGTTCATAATATCCACGC 385148 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 |||| ||||||||||| || ||| || ||| || || || | |||||||||||| Sbjct 385149 CACAGG-CAGTTACATTCAGGGGACAAATGG-TACTTCCAACGGTATAGTTCCCATGCTT 385206 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || ||||| |||| ||||| | || || || || || ||||| ||| | ||||| Sbjct 385207 CGAGTGTTCAACAACACTGCTCGCTATGTTGATCAAGGAGGAGGGAAGAGGAAAGG 385262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303193037018930