Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq461 104 2e-17 seq663 96.9 3e-15 seq846 93.3 4e-14 seq70 91.5 1e-13 seq189 89.7 4e-13 seq26 87.8 2e-12 seq14 86.0 5e-12 >seq461 Length=207379 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || |||| ||||| | || || | || || ||| || | Sbjct 160411 ATGCAGATTTTTGTGAAGACCCTAACCGGAAAGACTATCACGCTAGAGGTGGAGAGCAGC 160470 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||||| ||||| || || || || || || || Sbjct 160471 GACACCATCGACAACGTCAAGGCAAAGATTCAGGACAAGGAGGGGATCCCACCAGACCAG 160530 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | || ||||| || ||||||| ||| | | |||||||| Sbjct 160531 CAGAGATTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCAGGACTCTGGCGGATTATAAT 160590 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| || || || ||||| | ||| |||| || | ||||| Sbjct 160591 ATTCAAAAGGAGTCAACTCTTCATCTTGTGCTAAGGCTGCGCGGAGG 160637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| || ||||| | || || ||||| | || || || | || || | || || || Sbjct 159948 AAAAAATATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACTCTGGAGGTGGA 160007 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | || |||||||||||| | ||||| |||||| ||||| |||||||| || || Sbjct 160008 GAGCAGCGACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGCATCCCACC 160067 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 ||||||||| | || || | || ||| || || || ||||||| | ||| | ||| Sbjct 160068 GGATCAACAGCGTCTAATCTTCGCCGGAAAACAGCTGGAAGATGGCCGAACTTTGGCCGA 160127 Query 24164 TTATAACATTCAAAAAGA 24181 ||| || ||||| || || Sbjct 160128 TTACAATATTCAGAAGGA 160145 >seq663 Length=136023 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || || ||||||| | || || ||| || | Sbjct 59967 ATGCAGATTTTTGTGAAGACCTTGACCGGGAAGACGATTACACTGGAGGTGGAGAGCAGC 59908 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||| || ||||| || ||||| || || |||||| Sbjct 59907 GACACCATCGACAACGTCAAGGCAAAAATCCAGGACAAGGAGGGCATCCCACCGGATCAA 59848 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | ||| ||||| | || |||| |||| | | |||||||| Sbjct 59847 CAGCGTCTGATCTTTGCCGGAAAGCAGTTGGAGGATGGAAGAACCTTGGCGGATTATAAT 59788 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || ||||| ||||| |||| Sbjct 59787 ATCCAGAAAGAGTCTACCCTTCA 59765 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || || | |||||| | || || ||| || | Sbjct 60423 ATGCAGATATTTGTTAAGACCTTGACAGGGAAGACCATTACCCTAGAGGTGGAGAGCAGC 60364 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| || || || ||||| || || |||||| Sbjct 60363 GACACCATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCGGATCAA 60304 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || ||| || || |||||||||| | | | ||||||||| Sbjct 60303 CAACGTTTGATCTTCGCCGGAAAACAGCTCGAAGATGGTCGGACTTTGGCCGATTATAAT 60244 Query 24171 ATTCAAAAAGA 24181 ||||| || || Sbjct 60243 ATTCAGAAGGA 60233 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || ||| | ||||| | || || ||| || | Sbjct 60195 ATGCAGATATTTGTGAAGACCTTGACAGGGAAAACCATTACTCTAGAGGTAGAGAGCAGC 60136 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || ||||| || || |||||| Sbjct 60135 GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGCATCCCACCTGATCAA 60076 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | | || ||||| |||||||||| | | | | || || || Sbjct 60075 CAACGTTTGATCTTTGCAGGAAAGCAGCTCGAAGATGGCCGGACTCTGGCTGACTACAAT 60016 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || ||||| ||||| |||| Sbjct 60015 ATCCAGAAAGAGTCTACCCTTCA 59993 >seq846 Length=101360 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| || || ||||| |||||| || || |||||| | ||| Sbjct 82143 GACAAGGAAGGCATCCCTCCAGACCAGCAGAGGTTGATTTTCGCTGGTAAGCAATTGGAA 82202 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | | | | |||||||||||||| || || || ||| |||| || || || Sbjct 82203 GATGGCCGGACTCTTGCTGATTATAACATTCAGAAGGAGTCAACACTTCACTTGGTTTTG 82262 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || |||||||||| ||||| || Sbjct 82263 AGGCTGAGAGGAGGAACTATGAT 82285 >seq70 Length=1087276 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| || | || ||| | || || ||| | | Sbjct 269060 ATGCAAATTTTTGTGAAGACTTTGACTGGGAAGACCATCACCTTGGAGGTGGAGAGCTCC 269119 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| || || || ||||| ||||| ||||| || ||| Sbjct 269120 GACACCATTGATAATGTCAAGGCTAAAATCCAAGATAAAGAGGGCATCCCTCCAGACCAA 269179 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | |||||||||||||| |||| | | || ||||| ||| Sbjct 269180 CAGAGGCTCATCTTTGCTGGCAAGCAACTCGAGGATGGGCGCACTCTCGCTGATTACAAC 269239 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || ||||||| ||| Sbjct 269240 ATCCAGAAGGAGTCCACCCTTCATTTGGTG 269269 >seq189 Length=529659 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || ||| | || || | ||||||||| Sbjct 461075 ATGCAGATCTTCGTGAAAACCCTGACAGGCAAAACCATAACTCTTGAAGTCGAGAGTTCT 461134 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | |||||| || || ||||||||||| || ||||| ||||| Sbjct 461135 GATACAATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCTCCTGATCAG 461194 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||||| || ||||| |||||||| || | | | | | | |||||||||| Sbjct 461195 CAACGCCTGATTTTCGCTGGCAAACAACTCGAGGACGGCCGTACCCTTGCCGATTATAAC 461254 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| ||||| || Sbjct 461255 ATCCAAAAGGAATCCAC 461271 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| |||| || ||| | || || | ||||||||| | Sbjct 461303 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCC 461362 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || |||||| ||||||||||| || ||||| |||||| Sbjct 461363 GATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAA 461422 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | || || ||| | || |||| || | | | |||||||| Sbjct 461423 CAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATAAT 461482 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| || || || |||| Sbjct 461483 ATCCAAAAGGATTCCACCCTTCA 461505 >seq26 Length=1968749 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | |||||| | || || ||| | Sbjct 78697 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACTATTACCTTGGAGGTAGAGAGCTCT 78756 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||| || |||||||| ||||| || || |||||| Sbjct 78757 GACACCATCGATAATGTCAAGGCAAAAATCCAGGACAAAGAGGGCATCCCCCCAGATCAA 78816 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGC-GATTATA 24168 ||||| || || | | |||||||| || || ||| ||| | | | || || || | Sbjct 78817 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCACTCTT--GCTGACTACA 78874 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||| || || ||||| |||| || ||| | | ||| | ||||| Sbjct 78875 ACATTCAGAAGGAGTCTACTCTTCACTTGGTGCTGCGCTTGCGTGGAGG 78923 >seq14 Length=2767599 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/145 (75%), Gaps = 5/145 (3%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || |||||||| ||||| || || ||||| |||||| | || |||||| | ||| Sbjct 1621028 GATAAGGAAGGCATCCCTCCAGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAATTGGAA 1620969 Query 24144 GATGACAGAA-ACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGT 24201 |||| | | | || | || |||||||||||||| || || || ||| |||| || || | Sbjct 1620968 GATGGCCGGACACTT--GCTGATTATAACATTCAGAAGGAGTCAACACTTCACTTGGTTT 1620911 Query 24202 TAAGATTGAGAGGAGG-ACTATAAT 24225 | || |||||||||| ||||| || Sbjct 1620910 TGAGGCTGAGAGGAGGAACTATGAT 1620886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429885618890325