Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq2117 192 2e-44 >seq2117 Length=28532 Score = 192 bits (212), Expect = 2e-44 Identities = 254/345 (74%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 39221 GCGGCGACCTTCATCGCGCGCATCGGCTCCGGA-TTCAGCAGGCCGCCGCCGACGCGCTT 39279 ||||||| ||||||| | || ||| || | ||| ||| |||||||| |||||||| Sbjct 7733 GCGGCGAACTTCATCACCTTGAT-GGCGTCGAAGTTCTGCACCCCGCCGCCCACGCGCTT 7791 Query 39280 CGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATCGCGCAGCACGCGAACCCC 39339 || ||||||||||| || || ||||| |||| || || ||||||||||| || ||||| Sbjct 7792 GGTTGTGTAGAACAGCACATAGGGCTTGGCCGAATAGGGGTCGCGCAGCACCCGCACCCC 7851 Query 39340 GATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGCCGAAGAGAATCGGCGTCGAGTT 39399 | ||||||| ||||||||| |||||||||||||||| |||| | ||| Sbjct 7852 GGCCCGGTCGACGATCAGATAGCCGCGCTGGAAGTCGCCGAACGCGATCGACAGGCTGTT 7911 Query 39400 CGCCGCCACATCCGGCATGTCCGGCACCTCGGTAACCGGATAGCCCGCCAGCGTCGCCGG 39459 |||||||||||||||||| | | |||||| ||||||||||| || | |||| Sbjct 7912 GGCCGCCACATCCGGCATGGTCTCGATCTCGGTGACCGGATAGCCGAGCAAGGAAGCCGT 7971 Query 39460 CT-GCCCCGCTACGTACGACGGTTGCCAGAGATAGTTCCCTTGGCCGTCCTTCAGCTTCC 39518 || |||| || || || ||| ||||||| ||||| || | ||||||| | ||| | Sbjct 7972 CTCGCCCAGCCGCG-CCGCCGGCTGCCAGATGTAGTTGCCGTCCGCGTCCTTGAACTTGC 8030 Query 39519 GCAC--CTGACGCTGCGTGTTGCGGTTCATCGCGAAGCGGGCGTT 39561 |||| | ||| | || |||||||||||| |||| ||| |||| Sbjct 8031 GCACGGCCGACAC--AGTTTTGCGGTTCATCACGAAACGGCCGTT 8073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143401224847340