Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq189 96.9 3e-15 seq78 89.7 4e-13 seq26 89.7 4e-13 seq138 84.2 2e-11 seq25 84.2 2e-11 seq14 84.2 2e-11 seq461 82.4 6e-11 >seq189 Length=529659 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| || |||||||| || || || |||||||| || | ||| || |||| | Sbjct 461303 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTC- 461361 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| ||| ||| |||| ||||| || ||| || |||||||| |||| ||| Sbjct 461362 -CGATACTATTG-ACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGAT 461419 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || || || |||| ||| || ||||||||||| |||| | ||| | || |||||| Sbjct 461420 CAACAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTAT 461479 Query 115463 AACATTCAAAAAGAGTCTAC 115482 || || ||||| || || || Sbjct 461480 AATATCCAAAAGGATTCCAC 461499 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 ||||| || || || ||||| || || || |||||||| || | ||| || |||| | Sbjct 461075 ATGCAGATCTTCGTGAAAACCCTGACAGGCAAAACCATAACTCTTGAAGTCGAGAGTTCT 461134 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || ||| ||||| || |||||||| |||| |||| Sbjct 461135 GATACAATC---GACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCTCCTGAT 461191 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 |||||| | || |||| || ||||||||| | || || | | ||| | ||||||||| Sbjct 461192 CAGCAACGCCTGATTTTCGCTGGCAAACAACTCGAGGACGGCCGTACCCTTGCCGATTAT 461251 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||| ||||| || || || Sbjct 461252 AACATCCAAAAGGAATCCAC 461271 >seq78 Length=1009284 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || || || || || |||||| | || ||| | Sbjct 220947 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCT 220888 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || ||| || || ||||| |||| ||||| Sbjct 220887 GACACAATTG-ACAATGTGAAGACCAAGATTCAGGACAAGGAAGGGATCCCACCGGATCA 220829 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||||| ||| |||||||| | ||||||| | ||| | || || ||||| Sbjct 220828 GCAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCTGACTATAA 220769 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || || |||||| | ||| ||||| Sbjct 220768 TATTCAGAAGGAATCTACTCTGCATTTGGTG 220738 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || || || || || |||||| | || ||| | Sbjct 201343 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCT 201284 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || ||| || || ||||| |||| ||||| Sbjct 201283 GACACAATTG-ACAATGTGAAGACCAAGATTCAGGACAAGGAAGGGATCCCACCGGATCA 201225 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||| | ||| |||||||| | ||||||| | ||| | || || ||||| Sbjct 201224 GCAAAGGCTTATCTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCTGACTATAA 201165 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||| || || |||||| | ||| ||||| Sbjct 201164 TATTCAGAAGGAATCTACTCTGCATTTGGTG 201134 >seq26 Length=1968749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| ||||| || || ||||| ||| | || ||| | Sbjct 78241 ATGCAAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCG 78300 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | || ||| || || ||||| ||||| ||||| |||||| Sbjct 78301 GATACTATTGATAATGTGAAAGCCAAGATCCAGGATAAGGAAGGGATCCCCCCAGATCAG 78360 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | || | ||| |||||||| | || |||| |||| | || ||||||||| Sbjct 78361 CAGAGGTTGATCTTTGCTGGCAAACAGCTTGAGGATGGACGAACCCTTGCTGATTATAAC 78420 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || || ||| | || |||| | | ||| |||| || Sbjct 78421 ATCCAAAAGGAATCCACTCTCCACTTGGTTCTACGTTTGAGAGGTGG 78467 >seq138 Length=649818 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| |||| ||||||||||||| | |||| ||| || ||||||||||| Sbjct 591494 GACAAGGAAGGCATCCCTCCTGATCAGCAAAGATTGATTTTTGCCGGTAAACAATTAGAG 591435 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || | || ||||| ||||| || || ||||| ||| | || |||| ||| Sbjct 591434 GATGGACGTACTCTTGCTGATTACAACATCCAGAAGGAGTCCACTCTTCACCTGGTTTTG 591375 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 591374 AGGCTTAGGGGAGGAA 591359 >seq25 Length=1969896 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| |||| ||||||||||||| | |||| ||| || |||||||||||| Sbjct 1926777 GACAAGGAAGGCATCCCTCCTGATCAGCAAAGATTGATTTTTGCTGGTAAACAATTAGAA 1926718 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| | || ||||| || || || || ||||| || | || |||| ||| Sbjct 1926717 GATGGGCGAACTCTTGCTGATTACAATATCCAGAAGGAGTCGACGCTTCACTTGGTTTTG 1926658 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 1926657 AGGCTCAGGGGAGGAA 1926642 >seq14 Length=2767599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| |||| || ||||| || | |||| ||| || || ||||| ||| Sbjct 1621028 GATAAGGAAGGCATCCCTCCAGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAATTGGAA 1620969 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | || | || |||||||||||||| || ||||| || | || |||| ||| Sbjct 1620968 GATGGCCGGACACTTGCTGATTATAACATTCAGAAGGAGTCAACACTTCACTTGGTTTTG 1620909 Query 115499 AGATTGCGAGGAGGAA 115514 || || ||||||||| Sbjct 1620908 AGGCTGAGAGGAGGAA 1620893 >seq461 Length=207379 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || | ||||| || |||||||| | || |||| || Sbjct 160639 ATGCAGATTTTTGTGAAGACATTGACGGGGAAGACCATTACTCTGGAGGTGGAGAGTAGT 160698 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || ||| || || || ||| | || || || Sbjct 160699 GACACCATTG-ACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCA 160757 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || |||| ||| || || || || || |||| | || |||| |||||||| Sbjct 160758 GCAAAGGCTGATTTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACTTTGGCTGATTATAA 160817 Query 115465 CATTCAAAAAGAGTCTACT 115483 || || |||||||||||| Sbjct 160818 TATCCAGAAAGAGTCTACT 160836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425294156993800