Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq70 98.7 8e-16 seq663 95.1 1e-14 seq461 95.1 1e-14 seq2 93.3 3e-14 seq41 89.7 4e-13 seq185 87.8 1e-12 seq26 84.2 2e-11 >seq70 Length=1087276 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || |||||||| || || | || | ||| Sbjct 269271 AGCACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTGCGCCCATCC 269212 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| ||||| ||| | || |||| ||||||||| ||| | ||||||||| || Sbjct 269211 TCGAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGAGGGATGCCCTCTTTATCT 269152 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | |||||| | |||| |||| ||||||||| Sbjct 269151 TGGATTTTAGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTC 269092 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||| || || |||||||| ||||| Sbjct 269091 TTCCCAGTCAAAGTCTTCACAAAAATTTGCAT 269060 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| ||||||||||| || |||| ||| | | || || | || Sbjct 269718 TGTAGAGTGGACTCCTTCTGTATGTTGTAATCTGCCAGGGTCCTTCCATCTTCAAGCTGC 269659 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || || | ||| ||||| || | ||||| ||||| |||| Sbjct 269658 TTCCCTGCAAAGATCAGTCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGGATTTTA 269599 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| ||| |||| ||||||||||||||| ||| Sbjct 269598 GCCTTCACATTATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCAGTC 269539 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || || |||||||| || |||||| Sbjct 269538 AGGGTCTTGACAAAGATTTGCATT 269515 >seq663 Length=136023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||| || || || || || || |||| |||| | | |||||||| || Sbjct 59765 TGAAGGGTAGACTCTTTCTGGATATTATAATCCGCCAAGGTTCTTCCATCCTCCAACTGC 59824 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || || |||||||| ||| || | |||||| ||||| || ||| Sbjct 59825 TTTCCGGCAAAGATCAGACGCTGTTGATCCGGTGGGATGCCCTCCTTGTCCTGGATTTTT 59884 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||||| | |||| |||| || || || || |||| Sbjct 59885 GC--CTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGTGTAATCGTCTTCCCGG 59942 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || || |||||||||||||| Sbjct 59943 TCAAGGTCTTCACAAAAATCTGCAT 59967 >seq461 Length=207379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || ||||| || || | ||| || || ||||||||||| || || || || || Sbjct 160638 CCCTCCGCGCAGCCTTAGCACAAGATGAAGAGTTGACTCCTTTTGAATATTATAATCCGC 160579 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || || | || |||| || || || ||| | || | | ||| ||||| || Sbjct 160578 CAGAGTCCTGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCTGGTGG 160519 Query 16828 CACGCCCTCTTTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||| ||||| ||| |||| ||| || | | | | ||||||| | |||| Sbjct 160518 GATCCCCTCCTTGTCCTGAATCTTTGC--CTTGACGTTGTCGATGGTGTCGCTGCTCTCC 160461 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||| || |||||||| || || || |||||||||||||| Sbjct 160460 ACCTCTAGCGTGATAGTCTTTCCGGTTAGGGTCTTCACAAAAATCTGCAT 160411 >seq2 Length=8082884 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||| || | ||| | ||| Sbjct 7139388 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCATCC 7139447 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||| || || ||||||| ||||||||||| ||| | |||||| ||||| Sbjct 7139448 TCGAGTTGTTTCCCAGCGAAAATAAGACGCTGTTGGTCTGGAGGGATGCCCTCCTTGTCC 7139507 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | ||||| | ||| || | ||| |||| Sbjct 7139508 TGAATCTTGGCT--TTGACATTGTCGATTGTGTCTGATGACTCAACCTCGAGGGTTATGG 7139565 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 | ||||| |||| || || || || |||||||| || Sbjct 7139566 TCTTTCCCGTCAAGGTCTTCACGAAGATCTGCATCTT 7139602 >seq41 Length=1573182 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || |||| || |||| || || || |||||||| |||||||||||||| || Sbjct 839973 CCTCCACGCAGCCGAAGCACCAAGTGAAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCA 840032 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | ||||| || ||| |||| | || ||| ||||| || Sbjct 840033 AGTGTCCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGG 840092 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||||| ||| || | | | |||||| | |||| Sbjct 840093 ATCCCCTCCTTGTCCTGAATTTTGGCCTTTACATTATCGATAGTGTCAGAGCTCTCCACC 840152 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||| || || || || || || || ||||||||||| Sbjct 840153 TCCAAGGTAATGGTCTTCCCAGTTAGAGTCTTCACGAAAATCTGCAT 840199 >seq185 Length=543210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | ||| |||| || || || |||||||| || ||||||||||| || Sbjct 499129 CCTCCACGGAGACGCAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGCA 499070 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | || || || ||| |||| | || ||| ||||| || Sbjct 499069 AGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGGGGG 499010 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| ||||| | | | | ||| || | |||| Sbjct 499009 ATGCCTTCCTTGTCTTGGATCTTGGCT--TTCACATTGTCAATAGTATCAGAGCTCTCCA 498952 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| ||||| || || || || ||||| |||||||| Sbjct 498951 CCTCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTCACAAAGATCTGCAT 498903 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || ||||||||||| || | ||| | | ||| Sbjct 498430 AGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCATCC 498371 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| ||||| ||| |||| |||| ||| ||||| || | ||||| ||||| Sbjct 498370 TCAAGTTGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC 498311 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | |||||| | ||| || | |||||||| Sbjct 498310 TGGATCTTGGC--CTTTACATTATCAATAGTGTCAGAGCTTTCCACCTCAAGGGTGATGG 498253 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || ||||| || || ||||| Sbjct 498252 TCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 498219 >seq26 Length=1968749 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || | | ||| |||| || || || |||||||| || ||||||||||| || Sbjct 78923 CCTCCACGCAAGCGCAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 78864 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| || ||||| ||| | ||||||| |||||| || || Sbjct 78863 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGGGGG 78804 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||||||| || ||||| ||| || | | | ||||| | ||| Sbjct 78803 ATGCCCTCTTTGTCCTGGATTTTTGC--CTTGACATTATCGATGGTGTCAGAGCTCTCTA 78746 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || || || || |||| || || || ||||||||||| Sbjct 78745 CCTCCAAGGTAATAGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCAT 78697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405040530648850