Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq435 226 4e-54 seq549 143 3e-29 seq14 109 7e-19 seq23 104 3e-17 >seq435 Length=220439 Score = 226 bits (250), Expect = 4e-54 Identities = 419/607 (69%), Gaps = 6/607 (1%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||| || || || || || |||| || || ||||| || || || || Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || |||||||| ||||| ||||| ||||||||||| | | |||| | || || || || Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 104747 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 || ||||| || ||||| || || | ||||| || ||| ||| | | ||| Sbjct 104748 TATCCCTTCCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTCTAT 104807 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 |||| | |||||| || |||||||| ||||| |||| ||||| || |||| ||| Sbjct 104808 CCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAA 104867 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 ||| ||| || ||| || ||| || | || || || | ||||||||| ||||| || Sbjct 104868 CAGACGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTC 104927 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGGTAATCT 33018 ||| || || || ||||| || || || || |||||| ||||| | ||||| | | | Sbjct 104928 CGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCA-CGCGCCTCCGAGACTT 104986 Query 33019 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33078 | |||||| | || || | || | ||| || || ||||| ||| ||| || | Sbjct 104987 GGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGA 105046 Query 33079 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 33138 | || || | || || || || | ||| ||||| || || || || | ||| | | Sbjct 105047 AGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGAC 105106 Query 33139 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33198 || |||| ||| | ||| || ||||| | |||||||| || || || ||||| || | Sbjct 105107 GGAGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTTGT 105166 Query 33199 ACATATTCCAGATGTCAT-GATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 33257 |||| | |||||| | || ||||||||||||| || ||| |||| | ||| |||| Sbjct 105167 ACATCTCCCAGAT-TGATGGATATTGAATTGGGAACATACAGAATCGGTCTGGGTTTTCA 105225 Query 33258 GCAAGGA 33264 || |||| Sbjct 105226 GCGAGGA 105232 >seq549 Length=172529 Score = 143 bits (158), Expect = 3e-29 Identities = 405/614 (66%), Gaps = 6/614 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||| || || || || || |||| || || ||||| ||||| || || Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||| | ||||||||||| | ||||||||| | | |||| | || || || || Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 30723 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 || ||||| || ||||| |||| || || || | ||| |||| | | || Sbjct 30722 TATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACTCTCGCTCCCGTCAAT 30663 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 |||| ||||| |||||||| || || |||| || || ||||||| ||| Sbjct 30662 CCACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAA 30603 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 || || || || | | ||| || | ||| || || | || |||||| ||||| || Sbjct 30602 CAGGCGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTC 30543 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGT-AGAAGCATCTAGCCTCGGTAATCT 33018 || || || || ||||| || || || ||||||| | ||||| | ||||| | | | Sbjct 30542 GGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCA-CGCGCCTCCGAGACTT 30484 Query 33019 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33078 | || ||| | || || | || | |||||| || || || ||| ||| || | Sbjct 30483 GGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGA 30424 Query 33079 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 33138 | || || | ||||| || || | || ||||| || || || || | ||| | Sbjct 30423 AGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGC 30364 Query 33139 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33198 |||||| || | ||| || || || | |||||||| || ||||| || || || | Sbjct 30363 GGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGT 30304 Query 33199 ACATATTCCAGATGTCAT-GATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 33257 |||| | |||||| | || | || ||||| || || ||| || | | ||| |||| Sbjct 30303 ACATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATACAGAACCGGTCTGGGTTTTCA 30245 Query 33258 GCAAGGATTGGTTC 33271 || |||| ||||| Sbjct 30244 GCCAGGAGGGGTTC 30231 >seq14 Length=2767599 Score = 109 bits (120), Expect = 7e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| |||||||| ||||| |||||| | ||| | | || | Sbjct 700777 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCAAATGG 700836 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||| | |||||||| || ||||| || |||||||| || || || | ||| | | Sbjct 700837 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 700896 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||||||||| ||||| || | ||| | | |||| | ||||||| |||| | Sbjct 700897 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAGGATCTTTCAAGC 700956 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 || || || ||||| || | || |||||| || || || || || | |||| Sbjct 700957 GTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 701011 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || || | ||| | || ||||||||||||| || || Sbjct 700398 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCC 700457 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| ||||| ||||| |||||| ||||||| || || || Sbjct 700458 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 700517 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 || ||| ||||| ||||| |||| ||| | || || || || |||||||| || Sbjct 700518 TACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATAT 700577 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 700578 TCCTTCAATACTATCATCTTTCATG 700602 >seq23 Length=2045696 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 906677 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 906618 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || ||||| |||||| ||||||| || || || || Sbjct 906617 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 906558 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 || ||| ||||| || || |||| ||| | || || || || |||||||| || Sbjct 906557 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 906498 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 906497 TCCTTCAATACTATCATCTTTCATG 906473 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| |||||||| || || |||||| | ||| | | || | Sbjct 906309 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGTGTGAACCATCGCTGAGACATCAAATGG 906250 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || | | || | || ||||| || |||||||| || || || | ||||| | Sbjct 906249 TATGTTTTGAGTGCCAAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATTAGC 906190 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||||||||| ||||| || | ||| | | |||| || ||||||| |||| | Sbjct 906189 ATGTGCTGAGGCCTTTCCACAACCTTCCCTTGGACCTTCAGCAGGTAGGATCTTTCAAGG 906130 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 || || || ||||| || | ||| |||||| || || || || || | |||| Sbjct 906129 GTCTTGAAGCCAAAGTAATCGTAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 906075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633555845354000