Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_008364.1 Length=26537 Score E Sequences producing significant alignments: (Bits) Value seq2164 149 1e-31 >seq2164 Length=27727 Score = 149 bits (164), Expect = 1e-31 Identities = 276/391 (71%), Gaps = 17/391 (4%) Strand=Plus/Minus Query 22145 AATGAATATCACAGACGCGGGCTTACGCGGTTACGACCCTAAAGGCATTGTTATTCATAA 22204 ||||||||| || | || || |||| ||||| |||||| || |||| ||||| || Sbjct 10478 AATGAATATAACTAATGCTGGTGTACGTGGTTATAACCCTACTGGGGTTGTAATTCACAA 10419 Query 22205 TGACGCCGGGAGCGACTAC-GCAACCCCAAACTTTTATAGAAACTGGCTTCCACCACGTA 22263 |||||| || ||| | || | | | ||| || | |||||| | || | || Sbjct 10418 TGACGCTGGTT-CGAATGGTGCTAACGCTGGCTTCTACAACAACTGGTTACCTAATCATA 10360 Query 22264 ACAAAGAATTGGGTTTTGCTCATGTTTATATGTCAAAC-ACTGATAGATTACAAGCAGCA 22322 || ||| || ||||||||||| || || | || || |||||||||| | Sbjct 10359 ACCCTGAAAATGGCTTTGCTCATGTCTACATTGCTTCTGACGGA-AGATTACAAGTTTCT 10301 Query 22323 GACTTCAATTTAAAA--GCATGGCAC---GCCGGAAATAGCTACGCTAATGCTAACTACG 22377 || ||| | ||| | |||||||| ||| || | | |||| |||||||||||| | Sbjct 10300 GATTTC--TCTAATATGGCATGGCATTGTGCC--AACTCG-TACGGTAATGCTAACTATG 10246 Query 22378 CGTCGTGGGAGGTTTGCCAATCTAGCGGGA-ACTTAGCACAGTTCCTTAAAAATGAACAA 22436 | ||||| || |||||||| || ||| | ||| |||||| | | |||||| ||| Sbjct 10245 CAAGCTGGGAAGTATGCCAATC-AGAGGGCGATTTAAACCAGTTCTTGAGAAATGAGCAA 10187 Query 22437 GCGGTATTAGATGATGTAGCTAAATACATGAAACAATGGGGGCTAACCCCAAATCGTGAC 22496 |||||| ||||||| || ||||| |||||||||||||||||| |||| || |||||||| Sbjct 10186 GCGGTACTAGATGACGTGGCTAAGTACATGAAACAATGGGGGTTAACTCCTAATCGTGAT 10127 Query 22497 ACAGTAAAATTACACCGTGAACTCTCTAGCA 22527 || || ||| |||| | ||||| || |||| Sbjct 10126 ACTGTTAAACTACATCAAGAACTTTC-AGCA 10097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 84790572492500