Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq189 107 2e-18 seq78 102 7e-17 seq461 100 2e-16 seq663 98.7 8e-16 >seq189 Length=529659 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || |||||||| | |||||||||||||| || | ||| || | Sbjct 461303 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCC 461362 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | ||||| || ||| ||||||||||| | || |||||| Sbjct 461363 GATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAA 461422 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| |||| ||| || |||||||| || ||| || || | || ||||||||| Sbjct 461423 CAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATAAT 461482 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||||| || || || || || | || | | || |||||||||| Sbjct 461483 ATCCAAAAGGATTCCACCCTTCACCTTGTCCTCAGGCTTCGCGGTGGCA 461531 >seq78 Length=1009284 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || | || ||||| || |||||| | || |||| | Sbjct 220947 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCT 220888 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111305 || | ||| | | || || || ||| ||||| ||||| | |||| || |||| Sbjct 220887 GACACAATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGG-GATCCCACCGGATCA 220829 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||||||| ||| |||||||| | |||||| | || | || || ||||| Sbjct 220828 GCAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCTGACTATAA 220769 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || |||||||| || ||||| ||| | |||||||| ||||| Sbjct 220768 TATTCAGAAGGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGG 220721 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || | || ||||| || |||||| | || |||| | Sbjct 201343 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCT 201284 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111305 || | ||| | | || || || ||| ||||| ||||| | |||| || |||| Sbjct 201283 GACACAATTGACAATGTGAAGACCAAGATTCAGGACAAGGAAGG-GATCCCACCGGATCA 201225 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||||| | ||| |||||||| | |||||| | || | || || ||||| Sbjct 201224 GCAAAGGCTTATCTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCTGACTATAA 201165 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || |||||||| || ||||| ||| | |||||||| ||||| Sbjct 201164 TATTCAGAAGGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGG 201117 >seq461 Length=207379 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || |||| || || |||||||| |||| ||| || Sbjct 160639 ATGCAGATTTTTGTGAAGACATTGACGGGGAAGACCATTACTCTGGAGGTGGAGAGTAGT 160698 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | || || || ||| ||||| || ||| |||| || || Sbjct 160699 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAG 160758 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||||||| |||| ||| || || || ||||| ||| | ||| |||| ||||||||| Sbjct 160759 CAAAGGCTGATTTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACTTTGGCTGATTATAAT 160818 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || ||||| ||||| || || | || || || || ||||||||| Sbjct 160819 ATCCAGAAAGAGTCTACTCTTCACCTTGTCTTACGCCTTCGCGGTGGC 160866 >seq663 Length=136023 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || ||||||| || || ||||| |||| ||| |||| Sbjct 59967 ATGCAGATTTTTGTGAAGACCTTGACCGGGAAGACGATTACACTGGAGGTGGAGAGCAGC 59908 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | | || || |||||| ||||| || ||| | || |||||| Sbjct 59907 GACACCATCGACAACGTCAAGGCAAAAATCCAGGACAAGGAGGGCATCCCACCGGATCAA 59848 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || || | ||| || || || ||||| ||| | ||| |||| ||||||||| Sbjct 59847 CAGCGTCTGATCTTTGCCGGAAAGCAGTTGGAGGATGGAAGAACCTTGGCGGATTATAAT 59788 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| ||||| || || | || |||||||| || ||||| Sbjct 59787 ATCCAGAAAGAGTCTACCCTTCACCTTGTCTTGCGTCTCCGTGGTGG 59741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422990426983000